RnoINT0136937 @ rn6
Intron Retention
Gene
ENSRNOG00000014338 | Slc25a25
Description
solute carrier family 25 member 25 [Source:RGD Symbol;Acc:628666]
Coordinates
chr3:11442397-11444442:-
Coord C1 exon
chr3:11444292-11444442
Coord A exon
chr3:11444207-11444291
Coord C2 exon
chr3:11442397-11444206
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCAGTGACGTCTCTCCACAGCCT
3' ss Score
7.67
Exon sequences
Seq C1 exon
ACATTGAAAAATACCTGGCTACAGCGCTATGCTGTAAACAGTGCAGACCCTGGCGTGTTTGTTCTCCTGGCCTGTGGCACAATCTCCAGTACCTGTGGCCAACTGGCCAGCTACCCACTAGCCCTGGTCAGGACTCGGATGCAGGCACAAG
Seq A exon
GTAAGGCTGGACCTGGGCTGGCTTTCATGCCCTAGCATTTGGGGTGGCTGACTGATGGCATCTGACCAGTGACGTCTCTCCACAG
Seq C2 exon
CCTCCATTGAGGGTGCACCTGAGGTAACCATGAGCAGCCTCTTCAAACAGATTCTGCGGACTGAGGGGGCCTTTGGGCTCTACCGGGGGCTGGCCCCCAACTTCATGAAGGTGATTCCAGCTGTGAGCATCAGCTACGTGGTCTACGAGAACCTGAAGATCACCCTGGGCGTGCAGTCTCGGTGACGGGAGGGTGGCGGACTTGGTGACCCTGGGCTGCAGCCCAGGGTGTGCAGCCGCCTCATTCTGTGAATGTGCCAACACTAAGCTGACTTACCCAAGCTGTGAAACCCAGGATGCTGCAGGGGACGGGCAGGGAGCTGCAAGCGCTGGGCTGGTCCTGCTGACCTGGCAGACCTTTGTGTCTCTTCCAAGGAAGACCTGTGGACATTCCTTGGGGTCCAGGGGTCAGTAAGATGTGGGCTCCTGCACCTAGAGACAGGACGTTTTCCACAGTGCCTGCCAGGTAGCGAGCTTGGATGCCAGCTTAGCTCTTCCATCTCGTCACGCAACCTGACCTCAGCCATGGCATCCCTCTGGTCCAAAGAGCATTCCTGTGCCCCTCATCTCTTCCCACTGATGCGCTGGGGTAGGAAGTGGGCCCACCCCCACTCTTGTCCTTCTGTCCATCTTCCCTCAGTGCTGCTCTTCCAAACCTGGTTCCCAAGCTGTAGCATCCATGAGGACTGTGGTACGGGAAGCTGGAGAAGTACCATTATGTCCTCGCTCGCCTATTCTGAGCTCACCAGCAAGGCCACCTGGATGCGCCCAGGTCCTCAGGCACCGGCTGCCTGACACCATGGTGCATGGCTTTGCTAAAAGCTAGTGCTAGAACCTGGAACCCAGAGGATTTGTGCTGCCTGCATGGGCCTAATGTCCTCTGAGCTGCCCCTAAACCCTGTCAGGACTGGCACCAGCTCGTGCCCACACTCATGGTGGTTCTGTGGTGAGAGGGTGGGCAGGGTGTCTGCTCCAGGTCTGCTGCTCTGGTGAGAAGATGCTGAAGGCCTTAATTATGTCTTACTGGGTAAAGGATTTGGTTCAGAAGGACAAGCTGGACACTGCACGTGCCACACTTTCAGAGAGCCTGGGGGAAAGTGTGTTCTGAGGGCCCTGTGGGGCCAAGGGGGACCAGCCTCACATTCCACACGTGCGCCACTCTGCTTGGAGCCTATTTATTTTGTATTTATTTGAACAGAGTTATGTCCTAACTATTTTTATAGATTTGTTTAATTAATAGCCTGTCATTTTCAAGTTCATTTTTTTTATTCATATTTATGTTCATGGTTGATTGTACCTTCCTGTCACCAGCTGGTGGGGCATGGGGAGACAAGGTAGAAAAGTGGCCACAGAGTGACCTTACCTGCTGCCCACACTGACGGCATGTCCGTCTCACAGGAAACAGAAGGAAAGGCACAGGGAGGACTCTTCAGGCCAGGTAGGGTAGTGGGAAAGGTGGCGACTTCTTGACATTCTTTCCTGGACCGGGAGGTTTTCTTTATTTTGCCCTTTTGGAAAACACGGCAGTGAGGTGCTTCATTCACCAGGAATTTGGTGTGAGGGTGAGGACTGAAGGGCCTGCCTTCCCCAACCTGTGACCTGGTCTCGCTCCTGGCCCGAGACTGCCCATGCTCAATGAGTGGCCAGCTGGCCACTTGGCAATCATGCCTCCATTGCCCCAGAATGGCCTGATGAGGAAAATCCAAATAGGATGCAAAGATCAATGCAAAAGTCACCAGTCTGCATAGTCTGTGCTGTAACTGGAGTTTGTCAAAGACGAGCAACCTTCTAATAAAGTCGCTTCAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014338:ENSRNOT00000020206:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
A:
NA
C2:
PF0015322=Mito_carr=PD(61.5=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCCACTAGCCCTGGTCAG
R:
GCTGATGCTCACAGCTGGAAT
Band lengths:
175-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]