BtaINT0134944 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016775 | SLC27A1
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001033625]
Coordinates
chr7:5569889-5571774:-
Coord C1 exon
chr7:5571624-5571774
Coord A exon
chr7:5570057-5571623
Coord C2 exon
chr7:5569889-5570056
Length
1567 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
AGAGCTCTCCGCCTCCCCAGGAT
3' ss Score
6.68
Exon sequences
Seq C1 exon
GCCTCCTGCCTGAGCTTCTGGGAGCCCACGACCGAGCAGCCAAAGCCTGAGGATCCGTGAGCGGCTCCAGGTCAGCCAGGGAACAAGGTGGTGAGCGGTGAGGACAGCACTAGCCCTCACCTGATCAGCTGGAGGGCTTCAGGGTCTCTAG
Seq A exon
GTGAGCATTTAGGGTTAGGGTTGCAAATAAAGGACTCTGTGGAGCTTCCTGTGGAAGGATGGGGACCTGGTGTGTGGATTTTTTCATCCTCCCTGGGCAGCTGGGGTGTTATTGAGACTAAACTCACAAGATTTGGAGATTCGGATTTGGGATTAGTCGGGTCCCTGGAATATACCTTTAAGACTGAGACGGGGGTTGGATTCCCTCACAGGTCAGTCTCAGTCGGTGAAGAATCTTTCTGCAGTGCAGGAGGCCTGGGTTCCATTCCTAGGTCGAGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCATGGACAGAGGAGCTTGGTAGGCTACAGTCCATGGGGTCGCAAAGAGTCGGACACGACTGAGCGACTAAACCACCACCCAGGGGTTGGATATTCTGGGGCCCCTAGGCTGTGAGTTTAGGGCTCCTCAGGTTCCTGGAACGTGTGTTTAAAACCGAAGAGGCGTTAGGGATTGGATTTAGAACAAGCTGGGCCAAAACCCAGTACAGGTAGGCCCTGAGTATAAACTGGGACTTTTTAGTCCCCGGGCGGTTAGAATTCAGTTTGCCATCTAAGGCTTGGGCCGGGAGCGCCGGGGAGCCACGCCTCTTGGCTGAGTGACGCACAGTTTTCTAATTACCAGGCTGGGAGGGGAGCTGGGAGCCTAGCGAAATTTGGTCTTGGAGACAACAGCCGTCCTTGCCAGGGCGTTCTAGCCCCCGGGTCTCGTTGGCAGTGGTCTCTCTGGCCAGAAACCCCTCTCTATGGTCCTGGTCTCCGGTACGGGGTGGGCCTCGGCTGTGCCGCAGGGGTCTCTAAGTCAGGTCCGAAGAGAGCTTGTCTGGGAGGGCAGGTGGGGCGGGGCCTAGGGTGCTAGGTGGGCCCGGGGGGTGGTGACTGCCAAAGCCTGAGGGCGGGGTCGGTAGCCGGGGTGGAACTCAAGCCTGGGAACACCGGCTAAGCCCAGGATCGGGGGCGGGGCTTGAGCCCAAGGGCGGGGCCTGATTCAGAGTGGGGCGGGGCCATGGGACTAACCTAGGGGCCGAACCTGGTCTAGAGCGGGCGGGGCTCTGGAACAGTGCCTGGCGCTTACGGGCTGGGCCAGAGGCCCAACCTGGGGGCGGGGCCAAGTGAGTGGCGGAGGCAGGTGGAGGCGGGACCTAGGGGAAAGCCCGGGACCAGGGTGGTGGGGCCAAGGTGGAGCCTAGGCTTGTGGGTAAGTCGTTAAGGTGGAGCTTGGATTCTGGGTACCGCCGCTCAAACGAGGCATAGGGCGGGGCTCGCCAGTGACTGACGGAACAGAGACTGTGTCGGGGGCGTGGATATACACTAATGATTGGCAGAAAAGCCTGGGCCGGGCTTGAAGCAGGGAGGTCTGGGACGGGGCGGAGCCTGTCCGAGACACGTCCAATCCCAGACATCGGGGTGGGGCCTGGCTCAAAGCGGGAGCCGAGCTCGACCTGGGGGCGGGGTTGGGTCGGTCTTGAGGCGGGGCCCGGGCTGCCCGCGGCCTCAGAGCTCTCCGCCTCCCCAG
Seq C2 exon
GATGCGAGCTCCGGGTGCAGGTTCGGCTTCCGTGGCCTCTCTGGTGCTGTTATGGTTGCTCGGACTGCCGTGGACCTGGAGCACAGCGGCGGCGCTCGGCGTGTACGTGGGCGGCGGCGGCTGGCGTTTCCTGCGCATCGTCTGCAAAACCGCAAGGCGGGACCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016775:ENSBTAT00000055878:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(12.8=69.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCCTGAGCTTCTGGG
R:
TGCGGTTTTGCAGACGATG
Band lengths:
303-1870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]