MmuINT0145902 @ mm10
Intron Retention
Gene
ENSMUSG00000031808 | Slc27a1
Description
solute carrier family 27 (fatty acid transporter), member 1 [Source:MGI Symbol;Acc:MGI:1347098]
Coordinates
chr8:71569342-71570888:+
Coord C1 exon
chr8:71569342-71569448
Coord A exon
chr8:71569449-71570720
Coord C2 exon
chr8:71570721-71570888
Length
1272 bp
Sequences
Splice sites
5' ss Seq
CAGGCAGGC
5' ss Score
2.12
3' ss Seq
CTCAGCTGTGTGCTCCGCAGGAT
3' ss Score
9.48
Exon sequences
Seq C1 exon
CTCTCTCCACCCCCGGGTGTGAATTTCGACTTTCTCGGAGTCTGGAATGCTGAGAAGCCTCGGGGCTTGGATCTAGGACAAGCTGGATCAGGCAAGCTCCAGCACAG
Seq A exon
GCAGGCGCTGGGCGGGAGTGGGTCATGGGCGCAGGGATGGGGATCTTGCAGACTTTCTGGGATTTAGCGGGACGGAGCCACACCCCTGGAGCCATAGCCCCGCCTTCAGCACCTGCTTGTTTTCACCGCTTGGTTGCCGTGGAGACTCGTAGGTACCCTGGGCTAGCCGCTCTAGCTTGAGAGTCTCGTTGGGTTGCGGGCTCTCTGGCCCGCGGTTCTTCTCGATGGCCTAAGCCTTCCGGAAGGGGGTCGGCCGGTGCGGAGCCGGGTTGAGGGGCTGAGAGCTTTTGGCCGCGGATTGGAAGGTTTGGGGCGGGACTAGGTGGGCCGCACGGACCGGGCCTCTCTGTGAACAGTGACTGTCGAAGCCTGGAGGCAACGCGGGAGGCTCAGGTAGAATCTGGGTCCCGAATGCCAGATAGTCTCGGGACTGTGGGCGGGCCCGCGCCTGTGGGCGGAGCCATAGGCATCACCTGGCGCGTAGCCCGGGTCAGTGCGGAGGTGCGGATGGGGGCGGAATGTTGGGACTGCTGAGGGCGGGGTCAAAGGCTTCACCTGTAGGGAGGGATTTGAGGGTAGAGTGATCACCTGTGAGCTAGGGGGGTGGGGTCACAGGCCTTCATCTGGAGGAGGAGCCTCGATCAGGTTGCCGGACTTTGATTTGAGGCTCCCAATGTGGGCGGAGAAAGAGGCCTCAGTTGGGGCGTGGCCTAATGATGAGGGGGATGATGGAGGCTGTCCTTGTAGGAACACCCAGCCTCTGAGGCCGGATAAGCATGAGGATAACAAGTGAATTTTGAGACACAGAGGAGGGATGAGGCGACATTAGGGCATGGCCTGGACCATTGGCTGCGAAGGGCCTAGGTGTGTGCGGGTTACTAGGCGACCCCAGGCTTGGAGGGCTGAAGCTCAAGGGTGGAGCTTGACCGTGGGGGTGTCTAGCCACGTGGTCAGTGCTTGGGGAAGGGGGGAGGTCTGGCTTTGATGGGCGGAGGATAAAGATTGATATGGAAGTAGCCAATCCCAGGCCTTGAGGCGGTCAATGTTAAGTAAACTGGTTGGATTTGGCTTTCTTGGTGCTTAGCTCAGCGGCGGCGGGGCGGGACCTGATACTAAGGTACACGCTGGGGGCGGGGCCAGGCTTGTAGTAAAAGCGTTTGGGTTTAGGCTACAGTGTGGAAAAAGAACGCGGCCAGGGTCTGTGACGTGACCTGGGCGGGATCAGGACTAGGTGGGAGGCGGTACCTGCGGTCTCAGCTGTGTGCTCCGCAG
Seq C2 exon
GATGCGGGCTCCTGGAGCAGGAACAGCCTCTGTGGCCTCACTGGCGCTGCTTTGGTTTCTGGGACTTCCGTGGACCTGGAGCGCGGCGGCGGCGTTCTGTGTGTACGTGGGTGGCGGCGGCTGGCGCTTTCTGCGTATCGTCTGCAAGACGGCGAGGCGAGACCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031808:ENSMUST00000034267:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGGTGTGAATTTCGACTT
R:
TCTCGCCTCGCCGTCTTG
Band lengths:
258-1530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types