MmuEX0042990 @ mm10
Exon Skipping
Gene
ENSMUSG00000031808 | Slc27a1
Description
solute carrier family 27 (fatty acid transporter), member 1 [Source:MGI Symbol;Acc:MGI:1347098]
Coordinates
chr8:71568882-71570888:+
Coord C1 exon
chr8:71568882-71569023
Coord A exon
chr8:71569342-71569448
Coord C2 exon
chr8:71570721-71570888
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCAAAGAGCTGCCTTTGCAGCTC
3' ss Score
2.28
5' ss Seq
CAGGCAGGC
5' ss Score
2.12
Exon sequences
Seq C1 exon
ACTCAGGGGCGCTGTGAGAAGCGCCCAGGACTCTGCAAAGGGCTCATCCCCTGAAGGGACCCACCAGCTAGGCCTGAGCTCAGAACTTCCCAGTCCAGACTTCTGTGAGAACCTGCGAGGGAGCAGCAAGGGCCAGGGATCT
Seq A exon
CTCTCTCCACCCCCGGGTGTGAATTTCGACTTTCTCGGAGTCTGGAATGCTGAGAAGCCTCGGGGCTTGGATCTAGGACAAGCTGGATCAGGCAAGCTCCAGCACAG
Seq C2 exon
GATGCGGGCTCCTGGAGCAGGAACAGCCTCTGTGGCCTCACTGGCGCTGCTTTGGTTTCTGGGACTTCCGTGGACCTGGAGCGCGGCGGCGGCGTTCTGTGTGTACGTGGGTGGCGGCGGCTGGCGCTTTCTGCGTATCGTCTGCAAGACGGCGAGGCGAGACCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031808-'0-8,'0-0,5-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGGACCCACCAGCTAG
R:
GTCTTGCAGACGATACGCAGA
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types