MmuALTD0012982-1/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000031808 | Slc27a1
Description
solute carrier family 27 (fatty acid transporter), member 1 [Source:MGI Symbol;Acc:MGI:1347098]
Coordinates
chr8:71568923-71569432:+
Coord C1 exon
chr8:71568923-71569023
Coord A exon
NA
Coord C2 exon
chr8:71569342-71569432
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGC
5' ss Score
4.33
3' ss Seq
TCAAAGAGCTGCCTTTGCAGCTC
3' ss Score
2.28
Exon sequences
Seq C1 exon
GCTCATCCCCTGAAGGGACCCACCAGCTAGGCCTGAGCTCAGAACTTCCCAGTCCAGACTTCTGTGAGAACCTGCGAGGGAGCAGCAAGGGCCAGGGATCT
Seq A exon
NA
Seq C2 exon
CTCTCTCCACCCCCGGGTGTGAATTTCGACTTTCTCGGAGTCTGGAATGCTGAGAAGCCTCGGGGCTTGGATCTAGGACAAGCTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031808-0-0,1-0,2-0,3-0-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAGAACTTCCCAGTCCA
R:
AAGTCGAAATTCACACCCGGG
Band lengths:
98-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types