BtaINT0134945 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016775 | SLC27A1
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001033625]
Coordinates
chr7:5535849-5536223:-
Coord C1 exon
chr7:5536086-5536223
Coord A exon
chr7:5536014-5536085
Coord C2 exon
chr7:5535849-5536013
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CCCGCTCTCCCCTCTGCCAGGTG
3' ss Score
11.96
Exon sequences
Seq C1 exon
GGGAGCCCGGCCTTCTCGTGGGTCAGATCAACCAGCAGGACCCACTGCGTCGCTTCGACGGCTACATCAGTGAGAGCGCCACGAGCAAGAAGATCGCCCACAGCGTCTTCCGCAAGGGTGACAGCGCCTACCTGTCAG
Seq A exon
GTGTGCAGATCCCGGGGGCCGGCTGTGGGGGTGCTGGGCCACCGTCTCACCTCCCGCTCTCCCCTCTGCCAG
Seq C2 exon
GTGACGTGCTGGTGATGGATGAGCTGGGCTACATGTACTTCCGGGACCGCAGCGGGGACACCTTCCGCTGGCGTGGGGAGAACGTCTCCACCACTGAGGTGGAAGGCGTGCTAAGTCGCCTTCTGGGCCAGACAGATGTGGCTGTGTATGGAGTGGCTGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016775:ENSBTAT00000055878:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.6=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(11.4=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTCAGATCAACCAGCAG
R:
TCCCGGAAGTACATGTAGCCC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]