DreINT0150295 @ danRer10
Intron Retention
Gene
ENSDARG00000006240 | slc27a1a
Description
solute carrier family 27 (fatty acid transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-050320-112]
Coordinates
chr3:52337185-52340158:+
Coord C1 exon
chr3:52337185-52337322
Coord A exon
chr3:52337323-52339993
Coord C2 exon
chr3:52339994-52340158
Length
2671 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
TTTATTCTGGTGACTCTTAGGTG
3' ss Score
7
Exon sequences
Seq C1 exon
GAGAGCCTGGGCTGTTGGTGGGCAGAATAAATCAGCAGGATCCTCTGCGTCGGTTTGACGGCTACGCGAGTCAAGAAGCCACCAGGAAGAAGATCGCCTACAATGTGTTCAGGAAAAACGACTCTGCCTATCTGTCAG
Seq A exon
GTGCAGCTTTACACACTACAAAGATGTGGCAGAAAGTTTCTCACTGTGTAGAAGTTCAACTTTCTTGATGGATTTTCTGCACCACCAGGCAAGAGTTACAGTTCAGATTTTGAAAGAAGTCTTTTGTGCTCACTAAAGCTGCAATTGTTTGATCAGAAAAGGTGTAAAAAGTGTCATATTTGGATGCATTTCTACAATTTAAAGAAACTGTTGTTTTAAAATGCATTTTTAATTATTATATAGTTATTTCTGTATTTTAAACGTAATTGCCAGCATCATTACACCAATTTTCAATGTCACATGATACTTCAAAAAATTATTATAATGGTACTTAATTATTTTTTTTAATCATAAATATTGAAAATATTTATATGATGATGCAGTACCATTCAGCAGTCCGAGATTACCAAAGTAAATCTCATAAAATGTGTTAGAAATAGGGTTGAACAATACATTGTTTTGAGCATCGATATTGAAATGTGTGTATCCACAATAGTCACATCGTCGGATTAGATTATTTAATAAAGATATTATTCAATATTATTTTATATTATTGCATATAATTATTTATGCAATGATAACAAAGTCATTTTATTTTTGATTGTTCGATTTTTAATATTTGACTTCTGTTGAACACTGACATTAAATCATAAAGCACTGTTTATTTAACTTATAAGTTTGCTCTGTTGTAATTATAAAGGCTTTTAATTTATAGTATTTTATGCTGGTGCACTGCATAGAAAGACTTGATTAGTCTAGTCGATCTAAATTGATGAAATCCAAATAGACATTCACATCTAGACATCTGATAAAAATTTATATTGGTATCGGAATATTTATTGCAGCAACACGAAATATTGCAATGTCAGATTTTTCTAATATCGTGCAGCCCTATTTATATTACAGATTTAGAATTGAAATAAATTTTTTTGATTTACTTACAAACTAACTAACTCTTCATATAGTATTATTAAGCCATTATTAATCGAGCACTAATAATAATTTAGCTGCAAATTATCAGATTAGGCTGGTTTCTGAAAGATCATGTGATATTGAAGACTGGAGGAATGATACTGGAGAATCAGCTTTGAATGACAGGAATAATTGCATTATAATAAGAAGAATTGCTAGATTTTAATAATAGTCAGAATAATTAATGTTTTCAGTATTACACTTTTGACAATATCAAATAAATGCTGACAAGGCTAAAGACCTCTTTCAAATACACAAAATTTGAAAAAGGAAAAAAAGAGACCACTTGAGGCGAGGCAGTGGCACAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGTCGCTGGTTCGAACCTCGGCTCAGTTGGCGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCCTTCACGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCAGTCCAAAGACATGCGGTACAGGTGAATTGGGTAGGCTAAATTGTCCGTAGTGTATGCGTGTGTGTGTGAATGTGTGTGTGGATGTTTCCCAGAGATGGGTTGCAGCTGGAAGGGCATCCGCTGTGTAAAAACTTGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGCGACCTTAGATTAATAAAAGGACTAAGCCGACAAGAAAATTAATGAATGAAAGAGACCATTTGGACATTTCTTTGGAAAATGTACAATATTTAATATATTTGAGTAAAACAGACTTTTATTTTTTTATTCTAAAAACTACAGATGACATTTCTTCCAATCTAAAAAAAAATGTTGTCTTTTTGAATAGATTCTGCAAAATACATAAAACTGGGGATGGTTCATTTATTTTTAGATAACACAATGCCAGTATATTAACTTATTGTCATAAATCTGGATTTTGCTTTGTCACCATGGGGTGTGCAATGTAGACTTATGGAGAAATAGGTCCTTTAAAGCTTTTTAACAAAGCCGCAAAAACAACAAAATGTGAAAAAACAGAAGAGGTGTGAATTCTTTTGCAATCCAAGGTATAGTGTTAAAGTCTTCTTTGCTTATACCCATTTAAAAAGCAATCATCGTTTAAAGCGAATCATCACCTTTCATCAAAGTTGTCCTAAGACTATTAAACAAAACCCGTTCTTGTCATAGGATAATTTTGAAAAAAACAGCAGGCACTGAATTAGGAGAACGGTTTTGTATTGCACTTAAACTGCATTAAACAGAATCATAAATAGCTTTAACACACATCTTTCAAAATCAAAGTTGTGCATCTTAAAAACACTCCTTAACCGAATCAAAATGGTATAGCACCTACTATTGGATTGAGAACCACCAGTTAAGAAATGCTGCTCTCGCTATGGCAGCTTCTTTGCAGCAGTGAATAAAGTCTATATACACCATTCATTTTTAAAAACAATTTGTATTTTTTGTATTTTATACAGTTTAAATGGTTAATAAGGCACATATATCATACATGTCACATGCATATTGTCTCAAGAGGGCAGAAAGGATAAAATCAAAAGTGCTAAATTAAAAAAATAAAAAAAATGGTGCAACATACATACTCTTAATTTCACACTTATTTAAATGTACCTTAAGCTAAAGCACCAAAAAAAAAAAAATAAATAAATCAATAAAACATGTCGAAAAAAACTCATTCTGCTATTTTGTGAACTCACCCTGTAAACTTTTCTTTTATTCTGGTGACTCTTAG
Seq C2 exon
GTGATGTTTTGGTAATGGACGAGCTTGGATACATGTATTTCCGAGACCGAAGCGGAGACACGTTTCGTTGGAAAGGAGAGAACGTGTCCACCACTGAAGTAGAGGGAACGCTGAGCGGCCTGTTGAGACAGACTGATGTGGCAGTGTTTGGAGTAAACGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006240:ENSDART00000018908:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.6=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(5.5=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]