BtaINT0134949 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016775 | SLC27A1
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001033625]
Coordinates
chr7:5545029-5545712:-
Coord C1 exon
chr7:5545318-5545712
Coord A exon
chr7:5545191-5545317
Coord C2 exon
chr7:5545029-5545190
Length
127 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CGACGTGTTTCGCGCCGCAGCGG
3' ss Score
6.9
Exon sequences
Seq C1 exon
CGGCCTTTCCGTGCTGATACGCGTGCGCCTGGAGCTGCGGCGGCACCAGCGCGCGCGCCACACCATCCCACAGATCTTCCAGGCGGTGGTTCAGCGGCAGCCCGAGCGCCTGGCGCTAGTGGACGCGGGCAGCGGTGCGTGCTGGACCTTCGCGCAGCTGGATGCCTACTCCAACGCTGTGGCCAACTTGTTCCGCCGGCTGGGCTTCGCGCCGGGCGACGTGGTGGCCATCTTCATGGAGGGCCGGCCTGAGTTTGTGGGGCTTTGGCTGGGCCTGGCCAAGGCAGGCGTGGAGGCCGCGCTGCTCAACGTGAACCTGCGGCGGGAGCCCCTGGCCTTCTGCCTGGGCACCTCGGGCGCCAAAGCCCTGGTCTTCGGAGGGGAGCTGGCGGCGG
Seq A exon
GTGAGGCCGGGTGTGGGTAGCATTTCTCGGTGGGGGCCTGGGGCTGCTCAGGGCAGGGAGACGGTGCTTCCCCCGCCCTGGGAGGGGCACCTGTCCATCTTCAACCACGACGTGTTTCGCGCCGCAG
Seq C2 exon
CGGTGGCGGAGATGAGCGGGGAGTTGGGCAAGAGCCTGGTCAAGTTCTGTTCTGGAGATGTGGGGCCTGATGGTGTCTTCCCGGACACCCAACTCCTGGACCCACTGCTGAAGGAGACCTCCACAGCCCCCCTGGCGCAGCCCCCTGGCAAGGGCATGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016775:ENSBTAT00000055878:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(24.4=79.7)
A:
NA
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGGTGGCCATCTTCATG
R:
GCCCCACATCTCCAGAACAGA
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]