BtaINT0134953 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016775 | SLC27A1
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001033625]
Coordinates
chr7:5537542-5543984:-
Coord C1 exon
chr7:5543875-5543984
Coord A exon
chr7:5537752-5543874
Coord C2 exon
chr7:5537542-5537751
Length
6123 bp
Sequences
Splice sites
5' ss Seq
ACGGTCAGG
5' ss Score
4.63
3' ss Seq
ACTTCCCACCCCACCCCCAGGTG
3' ss Score
10.12
Exon sequences
Seq C1 exon
GGAACATCATGGGCGTGGGTCAGTGTCTCATCTATGGGCTGACGGTGGTCCTGCGCAAGAAGTTTTCAGCCAGCCGCTTCTGGGATGACTGCGTCAAGTACAACTGCACG
Seq A exon
GTCAGGCCCCGCCCCTCTTTCACCCCTACCCTCCTCCCACCCGTCCGCTTTACTTCTCTGAATGGCTTTCTTGCAGGGACGTGAGGGGGCTCGGAGGGGGTCATCAGTGCTTTATGCTCTCTGTCCGGCCAGAGACTAAACCTTCAACATGTAAGCTCCTTGTATCCTCATAGCTGCTTGGGAGCGGGCAAAGGCATCACACCCATTTTGCAGGTAGGGAAACTGAGGCTTCTAATGCAGTTAGGATTGGACGCGGACTGCCTGAGCTCCTTAAGATGCTGCCTTCCCCACACCCTGTGCCGGAAAGGTTTTCCCTGCTGGTAGCTGCAGGCAAATGGATGGGTCATGCTTCCTGGTGGGGTAAGCATGAGGCAGAGGTGGAGGGCATCACTGTCCTGCAGAGCAGGTAGGGGTTAAGACAAGTCCTTTCCTCTCTCTGCCCTCCTCAGTGAGAGGAGACAGCCGGAAGGTTTCAGTGCCATGGTGGGGGTGGAAATCCAGGTGCTAGTACCTTCCTCCAGGTGGAAGAAGGAGTGAGAAGGGGGTGTGTCCAGAGACTGACAAATTGGGAGGTGCTGCCGAAGGCAATGACACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGTGGGCTGTAGTCCATGGGGTCGCTAAGAGTCTGACACAACTGAGCGACTTCCCTCTCACTTTTCACTTTCATGCACTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGCAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCCGACACGACTGATGCGACTTAGCAGCAGCAGCAGCAGCCCTCACCTTGAACAGGCGGGGCCGGGAGGGGTTCAGCTGGTTGCCTGAATCACACAGTAGGGCAGGGTGGGGGCTCTGGGCTGGCATCCTGGGGGACCCCTCAGGGTGAGGGCGGTGCCCTGCTCTGCTTCTGAGGATTTTATGTTCTACTTGGAGGTGGGGGGTCTTGGGAAAAATTGCTAATCTGAATCTTGACACATTAAACAGTCCATTTGATTAACTCAATTATTGAGAGTTGGAAATACAAACGCGGACAGAAACGTTTAGGGGCTTCCCAGGCACCCATCGCTCAGCTCCAGAAGAGATCAGATGCCCTGTCCTGCCCCCTTCGCCTGCCCACCCATGTCCCTTCTCCAGTCTTGTTGTGAAGCAGCTCCAGACAGCAGCCCATTTGCTTTAGAGATAATCTCAGTGAAACCGCCAAAAGATGATGGGTTTTTTTTCTAATTGAGGTGAAATTTACATAAGATTAGCCATTTTGAAGTGGGCACTTTAGTGGTATTTAGTCCATTTATAGTGTTGTACAACTAGCCCCTCTATGCAGTTCCAAAAACTTTCCATCACCTCAAAAGGAAATCCTGTCCCCCTTGGCAGCCACTCCCCATTCCCCCCTCCCCCCAGGAATCTTTCTGTCTCTATGGGCTGGCCTGTTCTGGACATTTCTTGTAAATGGGACCTCTGTGTAGGCTTTTGTGTCTGGTGAGGGCTGTCCTTAAAACAAAAGATCTGAAAGCAGGGTCTCAAAGAGATATTTGTCCATCCATGTTCATAGCAGATTATTCACAATAGATAAAACATGAAAGCAACCCAAGTGTCCATCCACAGATGAATGGATAAGCAAAATGGGTCCATCCCTACAATGGAATATTATTCAGCCTAGAAAAGGAAGGAGACTCTGACACAGGCTACAATGTGGATGAACGTTGCAGATATTATGCTAAATGAAATACGCCCATCAAAAAAAGACAAATACCGCCTGATTTCACTTACATTAGGTACTCACAGTAGCTAGAATCATAAACAGAAAATAGGGTGGTGGTTGCCAGGGGCTGGGAGGAGGGAAGAATGGGGAATTAGCATTTAATGGGGATACAGTTTTAGATTTACAAGATGAAAAGAGTTCTGGGATGGATGGTGGTGATGGCTGCTCAATAATGTAAATGTGTTTAATACCCCTTTAAAATGGCTACCCAGGTGGCGCAGTGGTAAAGAATCTGCCTGCCAGTCGGGACACAGACTCAATCCTTGGATTGTGAAGATCCCCTGGAGAAGGAAATGGCAATCCACTCCAGTATTCTTGCCTGGGAAATCCCAAGAACAGAGGAGCCTGGCGGGCTACAGTCCATAGAGTTGTTAAGAGTCGAACATGACTGAGGGACTGAGCGTGCACACACAAAAAAATGCCAAGATGGAAAAAGAAAATGCTAAGGTGGTGAATTTTATGTTATGTGTATTTTACCACGATAGAAGAGGAAAAACAAGAAGGAGAAAAACCCCACAAACACATAACTGCAGTATCATTATCACAGCCCCAAAGGATTTCTCAACGTCAAATCCTGTCCCCAAAGCGACAGGATTTCTCAACCATCAGGAACCTAGACACTGATCCCCAGTGTCTTACCATGTCAAAAATATGGGTTTTTTTTTTTTTTTCTTGTTTCTATATATTTTTAAAAAATTTAAATTAGATAAGACCCACACATGGCAACTAGTTGAGGTTTCTTGTAAGATTCCTTGTCTCTCATTCTTTCTCCTTTTCCTCCCTCCCTTCCCTTATAATTTATTTATTGAAGAAAGGGAGTTTGCCCTGTGGTGTGTTCCCAGCCTGGGGATTGCTGTGAGGTCCCTTGACATACTCCTGTCACTCTGGTTTTTCCTGTGCCTTGGGAGTAGGGTTAAGCCCAGCAATTTTTTTTTTTTTTAATCTATTTTTAAAAATTGAAGTATAGTTAATTGACCATGTTGTCTTGGTTTCAGGTGTGCAGCAAAATGATTCAGTTATATCTATTTTTTTCTGATTCTTTTCCATTATCGGTTATTACAAGGTATTGAGTACCGTTCCATGTGCCCCACAGTATGTCCCGTTGCTTATTTTATATATAGTCGTGTGTATCTGCTAATCCCAAAGTCCTAATTTATCCCTTCCCGCCCCCGACCCCCTTTCGTAACTATTAGTTTTCTATGTCCGTGAGTTGTTTCTGTGTTGCAAGTAAGTTCATTTGTATCGGTTTTTTAGACACCACATGTAAGTGATACGTGGTATTTGCCTTTCTCTGCCTGACTCCATTGTATATGGCACTCTCTAGGTCCATCCACGGCGCTGCAGACGGTATCATTTCGTTCTTTTGTTATGGCTGAGTAGTGTGTATATTCCATTGTGTATACGTACCACGTCCTCTTTATCCGTTCATCTGTCAGTGGACATTTAGGTTGCTTCCATGTGGACACTGAGATGCATGTATCTTTTCAGATTAGAGTTTTGTCCAGATACGTGCCTGGAAGTGGGATTGCTGGGTGTTTAGTTTTTTAAGGACTGTCTGTACTGTTCTCCATAGTGGAAGCACAGCATCTCTCAACTACAGCGCTGTGGACACGTGGCTCTGCCTCGTTCTCTGTGGTGGGGACCACCCTGCGCACAGTAGGATATTTAACAGCATTTCTGGCCTAAAATCACTGGATGCCGCCAGGACCCCACCGCCCACCCGTGATAATTAAAAATGTGTCCAGACATTGTCAAGTTCATGGCCATGGTTCAAAACTACTGCTTTAGATATTTGATTGATTCAGCGTCTACTTTTTTGTTTGGGGTTCCCTGTGGGTGGTGTCATGGCCTCCTACTGGGAGGCCCGCAGTGTCTGGTGGCCCCTCTCTTTGTCCTTGACACACATATGTTGCTTCCGTTCTGTTTCCTTAAAGAGTTATTTCTGTGACCAAGAGAAAGCATTGAGGAGCTCTATAAGGATTAGATAGGGTGGAATCCTCAAGTGAAAGTCACTCAGTCGTGTCCAACTCTCTGTGACCCCATGGACTGTAGCCCGCCAGGCTCCTCTGTCCATGGAGTTCTCCAGGCAAGAATACTGGAATGGGTAGTCGTTCCCTTCTCCAGGAATCTTTCCTACCCAGGGATCGAACCCAGGTCTCCCGCACTGCAGGCGGATTCTTTACCATCTGAGCCACCAGGGATGCCACCAGGACTTAAGAAATGCTGCTGGGTTCAGAAATCCCATCTCATGGCTGTTGGATGGGAGAAACTGCATGGCTTTTTTTTTTTTTTTTTTTTTGCAGCAGTGGGTGCTGGCCCAGATCAACTGGCCAACTGTCCTTATCAGAGGCAGCAGGCTGTAATCTGCTTTCTTGGCTGCATAAAGCAGGTGGGCAGGCAATAGACAAGTCAACCCATCATCCATCTATGGGTATTTGGTTCCTGTGTCTCCCTGTCCATTTGGCTGTGTACATTTGGAGTTGTAGCGGGGGTCCCAGGTTGACAGTTCACTCCTAGCTTCTGCTCAGATGCTGCCCTGCAGGCTGGAGGTCACAGCATGGGGCGCCTGGTGTCTCCTCTCTGAGCTGACCTGAGTCGTTTTCCCTTTAGCCCTGGGTCTGTCCGAAGGTCCAGGCCAGAGTAAAGATCAGCTGTTTGACTCTCAGTACGTAGAGCTTGCCTCAGAGCCGCGGGCATGTCATTGTCACCTTCAGCTGCCTCAGTTGTGGTTCCGTTATCCCTTCCCCAGCCTAATTTCTGAAGAGGACAGTGGAAAGCTGCCTGGGACTATTTGTGATGGTCTGGAGGGCAGCTCTGTTCTTAGGCAGGACTTTGTCAGCTGACAGGTAAAACCGAAACCCTAACCCTAGCCCTAACCTAAACTCGAGCTTTCTTGAGGAAAGGCATATTATCAACTTGTGGAACTGAGGAAGCCAAATAGTGGACAGCTCCAGGCACATCTTGATGGAGGGGGGGGGGGGGGTGTCTCTTGTTTTTCTCTTCCTCTTGATCTCTTCTTTCCTTAGTGGGTGGCTTCCTCCCCACCCTTGCTTCCCCAAGAGGGTTCCCAGCAGCCCCAGTTGACAAAGAGCCTGTGTTCCCACCAGTCCATTGAAAGTCTCAGGGATGATGCTCATTGGCTGAGCTGTGGTCACATGCTTATCCTTGAACCAATCAGTGTCTGAGGATGGACTGGACTGATTAGCCAGGCTATATGACTTGCTCTGCCCTGGAAATGGGGTGGACTGGGCCACCAAGACAGGTGAAGGAGCCTGAGGGCAGAGGGAGATAACCCATCAGGGGTCTCTGATCTTGCCTTGCCCAGGCTTGCCTCCTGGTGATCTTCGCCCAACTGCATCTCCTCTCTGGGTCTTGGTGCCTTCACCTTCAATAGGGAGTGTTGGGAAGATTAAACAGATGAGCTCTGTGTTCAACAGGCTTGTATTCATCAGATCCGCACCAAGTCCTGCTCAGCCATGGTGGCATTTGAGCTGAGACCTGACTCTCAGTGCATCAGAGGGAAGAGTGTTCTAGGCAAAGGGCACGGTATGTTCAAAGGCCCTGAGGAGGAGACCCATGTGACAAGAGCACAGGAGTGAGCACAGGAGTTGGAGGGAGACAAGGTAGTGAGGAAGGCAGGGCCAGATGGAGTTGATCACAGGTCAAATTTTATAATGCATTTTGGTATGAGTACTTTGAAGCTATGACTGCCATGGTGGTTCATTCTGAACATGTAACTGTTTCATTGAGACTCTGGAGCCAGGATGTCAGATTCCAATCAGATTTTACCACGTTATCAGCCTTGGTGGGCACTTAGTGTCTATGAGCATCTGTAAAGTGGGGAGGGTACATTCAGAAGCTCACCTGAAGATGAGGACTCAAGGGCAACTGAGTATCTGGGAGACGACCCCAGAGGTGGAGCCACAGGAAAGAGAGGGAAGGAGCTGGCGGAGAGGGGTGGTCAGTAGCCCCTGAGCCACTGGGGCTAGGTCTGTGCTGTGACTTCAGGGAAGCCACAAAGAACATGACCTGACAGTTATCCCAGCCCTAGGTCAGGCGGGCAGCCTGAGCTCAGACAGGGCTCTGAGCGAGTGCATAAGTATAAATGGTCTGGACTGTTCTCCCGCTGTCATAATCTTTAAGGCCATTTTGCTCCTAGCGCCCAGATGGGAGGAAGGAGGTTGTTGGGTCTGGGGGGCCTCCAGCCCGCGGCAGCCTCCGCCCCCAGTGGGCTCCTCTCTGCCCCAGCGCAGGCGCTCACTGCTCACTTCCCACCCCACCCCCAG
Seq C2 exon
GTGGTCCAGTACATCGGGGAGATCTGCCGCTACCTGCTGAAGCAGCCGGTGCGCGAGGCGGAAGGACGGCATCGTGTGCGCCTGGCAGTGGGCAACGGGCTGCGGCCGTCCATCTGGGAGGAGTTCACGGAGCGCTTCGGCGTCCGCCAGATCGGCGAGTTCTACGGGGCCACCGAGTGCAACTGCAGCATCGCCAACATGGACGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016775:ENSBTAT00000055878:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]