RnoINT0137275 @ rn6
Intron Retention
Gene
ENSRNOG00000018170 | Slc27a1
Description
solute carrier family 27 member 1 [Source:RGD Symbol;Acc:620927]
Coordinates
chr16:20010031-20013334:+
Coord C1 exon
chr16:20010031-20010140
Coord A exon
chr16:20010141-20013124
Coord C2 exon
chr16:20013125-20013334
Length
2984 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGC
5' ss Score
8.56
3' ss Seq
CCCGCCCCTGGCCACCGCAGGTA
3' ss Score
7.83
Exon sequences
Seq C1 exon
GGAACATCATGGGCGTGGGACAGTGTATCATCTACGGGTTAACGGTGGTACTGCGCAAGAAGTTCTCCGCCAGCCGCTTCTGGGACGACTGTGTCAAATATAATTGCACG
Seq A exon
GTATGCCCCGCCCACTCGCGGGCTCCTCCCATCACACCAGGTGCCCAGCAGTCCCTGAGCTCTGGCTGGATCAGGACACGCCCTCATGGGAGGTCCCTCTCTGTCTAGCTGACCCCAAGCGAATCAGTAACTGCCTTTAGGGCACGCCTCTCCTGCTCTGGCCACGCCCCATTCTGGCTCCACTTTCTGCCACTCCCCTGTTCTACCCAGACCTCGCCTTAAGCTTGCTTCCTCGACTGACTGCTTTGTGTTCCCGACTTCCCAAGCCCCGCCCCTCCTACTCAGCCACGCCCCAACTGACCCGGGTCTCTCCTTGCTTAGCCAATTCCTCCTCCTAGGCTAGGTCCTGCCTCTCCCTTAGGCCCCGCCCTACTCAACCAACCAAGGTGCATCTTCCCAGGCCAAGTCCCATTCTTTGTGCTTAGTCGCCACCCTTCTTGCAAGGCCACACTAACCCAGGCAGGCTGGGTCCCACCTGCACAGGCCAGGTGCTCCCATCCAGGCTGTGTGCCACCAGATCAGGCCAGGCTCTTAACTAGGTGGTCCCATCTAGTTAAGCCCCACTCACTCTGCCTTCCTGCTTGCCAGCCTGCCTGCCCACCTTGATGGTGGGACCTCTGTCTCAGTGAGGAAAGGGGACCAGCCTGTGTCCCTGCAATGCTAAATGCAATGTAAATGCTTTGGAGCCTCCTACAGTATCACCAAGACATTGTACCTGTTTTACAGTCAGGGAAACTGAGGCTGTAATGCAGCTGAGACGGAGGTGCCCTGAATCTCTCCAGGTGCTACCTGCGTGGTTTGGGGTCCTTCTGAAGGGCCAGAGGCCATGAGTAGGATCAGCTCTGTGGGCAGGGAGAGCCCTAGGTGAGGGGTTAAGCACAGGCAGGGTATTGTGGCTAGAATGCTGGAAGCACAAACAGGCCGAGCTCCTTCACACCAGGCTGCAAGCGCTCTCCCTGACCCTTGGAACGTGGGACCCGCAGAATTGAGCAGAGGTGCAGGGCTGCTGGATGAGAGGAAGGAAGTGCTGTGTGTCCTGGTGTAGAGGAACCAGCAGTTGACTGACAGGCCCAGTGTGTGGCAGGGCTGATCCAGGCCGCACAGCCTTGCATGGCACCCCTGGAGGGCCCTGTACTCTGCCAGCACAGCATCCGTCTTAGGAAAAGTGCTAATTGGACGTTGAAACACTAAAGTCACTTGAGAAAAAGCCAGAGGAGCTGGGTGGTAGCAGGTCGGCACAGAGCCTAGCCCAGCATGTTCAGGGCCCTGGAACCTACCCCTCACAGCCCCAGCACACGGCTGTGGCTGGGTGACTTCATGTTAAAACTCAAGTGGGAACCCTAGGTTCACCCCAGATGCTGCATGCTCTGCAACCTCTACCTCTGTCTAGTTCCAGAACATTCCGTCCCTACCTGTGGTCCCTACTTCTTACTCCTCAGCCCTGATGTATGTACTTCATGCTGCCAGTTCACACACACAGGGTCTTTTGGCTCTGGGAAGGCATGCTGGCTTTACTTTTTAATCCTCTCCATATTCTGAAATCCAGCATGTGGCAGTAAGACCAGCCTGTATTACAGGACATGCTGAGCCCAGAATGGCCACTTCTCTGTTCTACATTTTGTGCATGATGTCAGGCGTATATGCATGTGTACACATACATATATATCTCCTTAGCCCTTGGCTGTCCTGGAACTCACAGAGATCTACCTGCATCTGCCTGCTGAGTGCTGGGAACACAGCCTTGTACCACAGTGGCACACCATTGCTGGACCTGTGTTGTCCACCTGCCTGTGGTGGAGTGTACCCTGGGTCACAGACCCCAATGGCACCCAGGTCCTTTTGTTTAGACCCTTCGCTGTGGGAACAGTGCACTCCTTTCAGTGCCTTCAGCGCCCTTTCTGTCACCTTGTGTGGTAATGAAAATCCCTGTGAGGCAGAGAGGTTCTAGGGCGGGGATGTCAGGGGAGGGACACGGGGATGTGCAGTGAAGAGCGGGGAGGTGGGGTGAGGGGCAGAGCGCTGAAGCCTTTGTTCAACAGGCACCAGAGAACAGAGGCTGCTGGGAAACCTTTCTGGGCTGTGTCTGTACCCTGGTAGATTGGGATTCACTCGGTTTCTAAGACAGGGTCTTACTTGACAGTCAGCATAGCCTGGACTCATGATCCTCCTGCCTCAGTTTCTTGAGTGCTGAATGGCAGTCGTGTGATATAAACTGAGCAGATAAGGCTCGAGGGCAGTCCTGGATTTAGGCAGGGTTTTAGTCAGTTCAGAAGCCAAAACCCAAACCCTAAGTCTACGCTTTCTAAAAGTTGGCTTTTCAGTCACAGGCATGGGAATGCTGCACCATGAAAGGGACACTCCGGCAGGCACAGTGTGACCCAGTAGGGCATGCTCTCTCTATCCCTCCCTTCCTCCTGTCTCTGTCCCCCTCCCTCCCTCCTCCTTTTTGGAGACAGACTCATGTCCTGGCTGGCCTGGAACTTGCTATGTAGCCAAGACTATGCACCGATTAGGTTCTAGTAGCCTTCCGTTTCAGTTGGCTAGCTTTTCTTAGCTCTCCCTTTACAGTGGTGGGAGGAGGAGGGTGTTAGTGTGGAGATGTTAGTGTGGAGACCAATACCTGTGGCTACAGATAGTTGGGAGACTGAGACAAGAGGAACCCTAGATTAGAGACTCAGTACACACCTGTCATCCTGGCATTTGGAGGACCAAGGCAGGGGGATAAGACATTCCTGGACAGCCTAGGCTACATAAGATCACTGTCTCTCAAAAACCATAAAAGGGGCTTAGCATATAGCCCTTGGTTCTGTCCCTAGCACCTTAAAAAGTCCTCAGTGCTGGTTCTCCTTGGTTCAGTACTGCTCTTGTGCTGACTCCTTAAAATGGGTGGTGGCAAGGCTCTTCCATCACTGGTCAGGTCCCACCCATCCCCGAGCCGTGCTCCTCATTGGGCCTTGCCTGAGCCCCGCCCCTGGCCACCGCAG
Seq C2 exon
GTAGTGCAGTACATCGGTGAAATATGCCGCTACCTGCTAAGGCAGCCGGTTCGCGATGTAGAGCGGCGGCACCACGTGCGCCTGGCCGTGGGTAACGGACTGCGGCCAGCCATCTGGGAGGAGTTCACGCAGCGTTTCGGTGTGCGACAGATTGGCGAGTTCTACGGCGCCACCGAGTGCAACTGCAGCATTGCCAACATGGACGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018170:ENSRNOT00000024659:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]