BtaINT0134976 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015436 | SLC27A4
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 4 (SLC27A4), mRNA. [Source:RefSeq mRNA;Acc:NM_001075667]
Coordinates
chr11:98967746-98968154:+
Coord C1 exon
chr11:98967746-98967910
Coord A exon
chr11:98967911-98968007
Coord C2 exon
chr11:98968008-98968154
Length
97 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCC
5' ss Score
7.91
3' ss Seq
CCACTCTGCCGCTTCCCCAGGGA
3' ss Score
7.69
Exon sequences
Seq C1 exon
GTGATGTGCTAGTGATGGACGAGCTGGGCTACGTGTATTTCCGCGACCGCACGGGGGACACGTTCCGCTGGAAAGGCGAGAACGTGTCCACCACCGAGGTGGAGGGCACGCTCAGCCGCCTGCTGGACATGGCCGACGTGGCCGTGTACGGCGTCGAGGTGCCAG
Seq A exon
GTATCCCGAGAGGTGGGAGGGGCCGGGCGTGTGTGCGGAGCAGCCAGCAGGGCCGTGGCCAGCCAGCCACTCACTGTCCACTCTGCCGCTTCCCCAG
Seq C2 exon
GGACCGAGGGCCGGGCCGGCATGGCCGCTGTGGCCAGCTCCTCCGGCAGCTGTGACCTGGAGCACTTAGCCCAGCTCCTGCAGAAGGAGCTGCCGCTGTACGCTCGCCCCATCTTCCTGCGCTTCCTGCCTGAGCTGCACAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015436:ENSBTAT00000020526:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(5.5=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
A:
NA
C2:
PF131931=AMP-binding_C=FE(64.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAAGGCGAGAACGTGTC
R:
CTAAGTGCTCCAGGTCACAGC
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development