BtaINT0134977 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015436 | SLC27A4
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 4 (SLC27A4), mRNA. [Source:RefSeq mRNA;Acc:NM_001075667]
Coordinates
chr11:98968008-98971732:+
Coord C1 exon
chr11:98968008-98968154
Coord A exon
chr11:98968155-98970917
Coord C2 exon
chr11:98970918-98971732
Length
2763 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
TTGTCTTCTCCCTCCCTCAGGGA
3' ss Score
12.25
Exon sequences
Seq C1 exon
GGACCGAGGGCCGGGCCGGCATGGCCGCTGTGGCCAGCTCCTCCGGCAGCTGTGACCTGGAGCACTTAGCCCAGCTCCTGCAGAAGGAGCTGCCGCTGTACGCTCGCCCCATCTTCCTGCGCTTCCTGCCTGAGCTGCACAAGACAG
Seq A exon
GTCTGTCCCCCGACCCCCAGCTCCAAATCATGGGTGGGTGCCGGCCGAGGCCCCTTCCCGGGTCCTTCTAGGGAGATCAGCTGGCTGTTGTTCGCCCTTCCCCGCAGCCTCTCTGGGTGGTCGGCAACATGACCTAGCTGTGAGCTGACACTGCCTCCAGAGATGGTGTGTCCATTGCTAGTGGAACCAATACTGACTGAGTGTGGTAGTCTGCTCCAGGCACTGTGCTTGGGCCCTGGGGATAGAGGCGACAAATTCCAGCAGGACCTGTGTGCTTCCTGGGAGTTTCCAGAGCAGGAGGCAGCCACAGGATAAGCAATTGCTAAGATAAAAGAGTGGAATGCAGGTCAAACTGATAGGAAAGGGAACGTGACTTGGGGATGACTGGAAGGCTCCCTTGAGGATGCTCCAGTTCAGCGGGAGACCTAGTGAGAGAGAGAACTCTGTGGGGACGGGAGGCCCCCTGGGCTGTGGGAACAGCCCGTGCTGAGTCCCTGAGGCAGGGAGGTGCTTGAGTGCTAGGGGACTGAAAGGAGGCCCCCGAAGCTGAGGCCAGTGAGGGGTGGGCAGCAACGTGTGGTGGGATGGGAGGGCACGAGGGAGCCACAGGAGGGTTGGAGCAGGGTAGTGACCCAGTCAGACTCATGTCCTGCAAAGCCCGCCAATGTCCGAGGGGCTGCAGATGGCCCCGGGGGACGGGGAGATGAGAGAAGAGCAGCGTAAGCGGTGGGTCCAGACAGACAGCAAGCACCCCAAGGACCAGATGGCCGCTGTGACTTCTGCATCCCGGAGGGACAGGGAGGCTGTCGGACCTTAGGCCTCAGACAGGCTTTGCTGCAGAACAGCCAGCCCCCCAAGCTTACTTAGGGGTCCAGACAGGTGTCTTAGTTGCTCACAATTTGTGGGTCGGCAATTTGGGGTGATGTTCAGCTGAGCGTTCTTCTGTTGGCCCCACCTAGCATCAAATAGTGCCATCGACAGCTTCCCCAGCTATCCAGTGGTTAAGACTCCATCTTGCAGTGCAGGGGATGTGTGGGTTCACATACACAGGATTAGATCCCTGATCAGGGAACTAAGGCCCCACATGCCTTGGGGTGTGGCCAAAAAACTTTTTAAAAGTTTTTAAAGAAATAGTGCCATTGGGTGTGAGGTGGCCTCCCTCATGTGGGGCTCCCAGCTGGTTGGCCCTGCAGTGGTGTCCACATACCTGTCTGCGGTGATGGTGGCATTCTCTGACCACGCTCTCCAACACGGCAGCCATCAGCCCCCAATACCTATTGAGCACTTGAAGTGCAACTAGTGTGATGGGGAAACTGAATGTTAAATTTTGTTTAAATTTACATAGCCACACGTGGCCAGTGCTTACCCACTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCAATTCTCTATAGCCCCATGGACTGCAGCATGCCAGGCCTCCCTGTGCATCACCAACTCCCAGAGTTTATTCAAACTCATGTCCTTTGAGTCGGTGATGCCATCCAACCGTCTCATCCTCTGTCATCCCCTTCTCCTCCCACGTTCAATCTTTCCCAGCATCAGGGTCTTTTCTAAGGAGTCAGTTCTTCACATCAGGTGGCCAAACTTTTTATTGGAGTTTCAGCTTCAGCATCAGTCCTTCCAATGAATATTCAGGACTGATTTCCTTTAGGATGGACTAGTTCAATCTCCTTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACATCACAGTTCAAAAGCATTAGTTCTTCGGTGCTCAGCTTTCTGTATAGTCCAACTCTCACATCCATACATGACTACTGGAAAAACCATAGCTTTGACTAGACAGACCTTGTCTAAGTGGCCTTTGCTGGGATGGTTCCCCTTTGTTCCACATGGCTTTCCATCCTTCAGAGGTCAGTCTGGTCTCAGGCGCCCCCAAGCGCGTAAGGATGGAAGCTTCAACACCCCTTGACTCACCCAGACCGCCCACAGTGTGGCTTCTGCCACATTCTCTGAGTCAGAGTAAGTTGTAAAACTAGTCTAAATTCAAGTAGGCGTTGAGAAAGACTCCAGCCCTTGCTGGGAGAATTGGCTGATGGACACGACAGAGGAGAAGCCAGGGCAGGAAGCTGTAGGCATTTCTGGTATCCATCATACCTGAGTTCAAATTCTTACTAGCTGTGTAACGTTGGCCCAGAGCTGTGCTTCTCTGAGCCTCAATCTTCTCGTCTGTCTAGTGGGGCTAATACCGTTGAGTGAAAGATACAGAATTTATTAAGGGGGAAAATGGTAATTGAACTATTTCAGACATGCTGAAATCTTGTGCATCTCAGAATCCATAGGATATGGTTATGCCTGGCCCCTGGGGTTGAGGTGCAGATTACCTGAGATTACTTCTATACCTTGGGGGTGCTCAGGTTAAAACGAGCCTTCAGGGAAGGCCTGTGTCCTGCCCTCAGTCCACTGTCACTCAAGCACGTGGCCCTGGACAAATAGCTTCCCTTCTTTGGGCCTCAGTTTCCTGTTTGCAAAGAGGGGTGGGTAACTCTGCCCCCTCCCCTTTGCCAGGGCTGCTGAGGAGCGGTGCGTACTGTAAAGGATGAAGCCTTTGCAGACTGTAAAGGGCTGTGTCCCTCCTCCCACGATTCCCCTCACCTGTGTTCCCTCCAGCCCTCCTCCCTGCCCCTCCTCAACCCAGGTGGGCGGGTTCCTGGAGCTCGGACCCCTGCCCCACACCCTCTGACCCCTCTCCCACTTGTCTTCTCCCTCCCTCAG
Seq C2 exon
GGACATTCAAGCTACAGAAGACAGAACTGCAGAAGGAGGGCTTTGACCCAACAGTTGTAAAAGACCAGCTGTTCTACCTGGATGCCCGGAAGGGCCGCTACGTCCCACTGGACCAAGAGGCCTACACTCGCATCCAGGCGGGCCAGGAGAAGCTGTGACTGGCCCCAAGTCCCTCTGAGGGCCAGTGGATACTGGATCTAGAGCCCCAGCTCCCACCCCGGAGGGGTCCTGGGCAAAGCCAGACCAAAGCAAGCAGAGTCTGGCACCACCCACCCCGAGGTGCCAACCCCCACCCCTCAAAACTGCCAGGGGACTCACTGCCACCTCCCTGCTCTGCCCTGAGGCTTTCTGTGAAAGCTTCAGATCCACTTTATGTCTTCGAGGCCAAGTAGGGGTCTCTGGGCCTCAGGCTGAGACTGAGACTGGGCCCAAGGGGTGATGTCTCAGGTCAGGACAAGGGGAAATAAGAGGGTCTCCAAGCACTTTGCAGAGAACAGGCAGCTTGTAAATGGGACGAGGGCAGAAGCCCCCAGACTCAGGAAGCCAGCACAGTGGGCAGGGAGGGCCGGTGATCAGGCATCTGAAGAGGATCCAGGCCCTGGGCCCACGCGAGTGTCCCTCAGCCCTGCCAGGCAGAACGGGACCATCCTGCAGCAGGCAGCCTAGACAGGGCACCCCTCTCACCCTCTGGGTGGCTGCCTGGCTGTCCCTCAGGCAGCCTGTCTTTGCCAGTCTGTCCACATCTCCTCCTGGCCTGGCTGTGAGGGGAGAAGGGGTGTGGGGCACTCAGGGGCAAATAAACTCCACCTTGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015436:ENSBTAT00000020526:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=FE(64.5=100)
A:
NA
C2:
PF131931=AMP-binding_C=PD(3.9=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development