MmuINT0145931 @ mm9
Intron Retention
Gene
ENSMUSG00000059316 | Slc27a4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:MGI Symbol;Acc:MGI:1347347]
Coordinates
chr2:29668308-29673042:+
Coord C1 exon
chr2:29668308-29668454
Coord A exon
chr2:29668455-29671095
Coord C2 exon
chr2:29671096-29673042
Length
2641 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
TTTTCTTACCCACTCTCTAGGGA
3' ss Score
9.65
Exon sequences
Seq C1 exon
GAACTGAAGGCCGAGCAGGAATGGCTGCCGTTGCAAGTCCCATCAGCAACTGTGACCTGGAGAGCTTTGCACAGACCTTGAAAAAGGAGCTGCCTCTGTATGCCCGCCCCATCTTCCTGCGCTTCTTGCCTGAGCTGCACAAGACAG
Seq A exon
GTCTGTCCCTGGTTCCAGCTCCTGGCTTTCAGGGCTGGGTCTTTCTGTAGTATAAACTCCCTGGCTAATCTCTTACCTTGACAAACAGCCTTGCCCGTAGGCTGAGATACTGCTCTCCTGGGTGGAAATGTGCAAACCCAGCTTCAGAGAAGGCTCACCATCTCTTAGAATGGGGACTATTCTATGGCTGCCATACTATGGTTTAGACCCAGAGTAGAAAAATTCCAGAGGTATGGAATGGGCTGGGTGTGGTAACACCCCTGTAATCCTGATGCTTCAGAATGGAGGAAAGAGGCCAGCCTTGGCGTTACAACACACAAGACCCTGTCTCAGCAACAACAAAGCAGCAAGAAAGAAAATGGACTTCAGATCATGGCACAATAGACTAGGACAGAACTCAGTGGACGAGCTTGTCTAATGTACATGAATCCTTAGGTTCATTCCCAGTAGCACAGAAAAATAGTAATAAGTGGGTGAGTGAGTAAGTAAATAATAAGGCATATAGGCAAATAGTATTAGACCAATAAATTAAAAGGAAAAAAGACCCCCGAACCTGGATGCTTCAACAGTAGTGTGCTGTGGGCCATCAGCAGAGGCCATCAGGACCCTTATAGGCCTATAGGATCTTATAGACCAGGGTGGAAGTGGGATGGCCTAGAAATAGTAGGAAGTTATCTAAATGTAAGATTGGTCCCACAGAGATCTCCAGCTTCAGGGTAGAGAGTGGCAGAGAACTATAGATGTCTCACAAGGAGTTAGTATCCAAGAGTGAGCTGTGGGTGGGTCTATGATCACATAGAGTCTTAGTCAGGGTTTCTGTTTCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTTGCTGTTCATCAACAACAGAAGTCAGGACTGGAACTCAGGCAAGTCAGGGAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGTTTCCCTGGCTTGCTCACCCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGCACCACCCACAAGGGGCCCTTCCCACCTTGATCACTAATTGAGAAAATGCCTTACAGCTGGATGGAGGCATTTCCTCAACTGAAGCTCCTTTTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAGAACCAGCCAGTACACATAGTAGCACAGTGACATCCTTCTGTAGTGGTCTACTGATGGCTTTCAGGAGTTCCCTGAGTCAGGAAGGGGATGTGGAATCTCCTGTTAGGCCCACCATACTGTCCTTAGGGTCCTTCCTGCCTCTCTCCATTGCTCAGGCTCATCCCTAGCTGCTTACCCAGGGGTCCATGTGCCTGACCCCCTCCCATGCATTGTCAGTTCCAAGCCTTCTCTGGCTGCTGAGGTCTGTCAGCTTGTGGACATCTGTACCCCATGCAACATATGAGACGGTGGGAGGGGCCTAGGCTGCAGTGTGACATAGGGAGGGACACAGGGCAGTCTCATAACTGAGGAGACTGAACTTCCTGAGGATTGGAAGTGTGACCCTGTCCAGGACAAGCAAGACAGCTTTTCTGCAGAGTGAACTACATGCAAGGATGTCTGAGGATCACAGTTCTGTAGGTTAGTGATGTGGGGTTTAAATTCAACTGTAAGGTGTTAGTGGGGCTGCAGAGGCCATAGTTGCTCTCTTCTGCAGCCCCATCCAACAAAACTTTGTGTGCTGGTAGGAGTGTTTGGCATCTCTACTGCCTACTATGGTGGCAGCTAGTACCATGGAGGGATTGGGCATTTAAGATGGAGTTGGTGTGCCTGAGGAACTGGCACATGGGCAGTGCTGGTCTAGGGGGCTGGTCTGGGTTGGTTTGTTTCTTTCATCTGCTTCTCAATCTTCCAAGGCTGGGCTGTCCTCAGGGATTTCTCCCCGCCAGCCCCAAGGCTGGGCTGGCCTCAGGGTTCTCTCCCTGCCACCCCCAAGGCTGGGCTGGTCTCAGGGTTCTCTCCCCACTGCCCCCAAGAGCGTGGGTTGGAATGGCAGGGTCCTTGGAAGCCTAGACTCACTGGAATTCCAGAGCAGTGCTTCAGAGCAAGCTAGAAGGCCAGTCTGGTTTGGAGTTTCTGGAATTGTGGTTTCTGTTGGGAGCAATAGGTAGCATTTCAGAGGCTAGCAGATCTAGGGAGAGGGTCTGTCATTCCTGTGTTCAAATCCTGGTTACCACTTATTTCCTGTGTGACTTTGCTTTCTCCCCCCAAAATGGCATGGTGATGTACCCCTTTAATCCCAGCACTGTAGATCTAGAGACCAGTGGATCGCTAAGAGTTTGAAGGACAGCCAGGGCTATCTAGTGAGACCCTGTCCATAAAAAGGGGGAAATGGAGAAGAAAATACATGCATCTTAGAATATGACTGAGCCTCAAGACGTTGAGGCCTCTGTGTCCAGTCAGTACTCAAATAAAAGGGACCAGATTCTGGCCTCTACTCTGCTGCCCATCAGAGATGTCGTTGGACATACAGTGTCCCCGTGTCCTTTCTCCCCTCCCTAGCTCTCCCTTTCTCAACCCGTCATCAGATTTGTAGGAGCTCCAACCCCTGCCTTGCACTTTCTGACTTTTCTTACCCACTCTCTAG
Seq C2 exon
GGACCTTCAAGTTCCAGAAGACAGAGTTGCGGAAGGAGGGCTTTGACCCATCTGTTGTGAAAGACCCGCTGTTCTATCTGGATGCTCGGAAGGGCTGCTACGTTGCACTGGACCAGGAGGCCTATACCCGCATCCAGGCAGGCGAGGAGAAGCTGTGATTTCCCCCTACATCCCTCTGAGGGCCAGAAGATGCTGGATTCAGAGCCCTAGCGTCCACCCCAGAGGGGTCCTGGGCAATGCCAGACCAAAGCTAGCAGGGCCCGCACCTCCGCCCCTAGGTGCTGATCTCCCCTCTCCCAAACTGCCAAGTGACTCACTGCCGCTTCCCCGACCCTCCAGAGGCTTTCTGTGAAAGTCTCATCCAAGCTGTGTCTTCTGGTCCAGGCGTGGCCCCTGGCCCCAGGGTTTCTGATAGGCTCCTTTAGGATGGTATCTTGGGTCCAGCGGGCCAGGGTGTGGGAGAGGAGTCACTAAGATCCCTCCAATCAGAAGGGAGCTTACAAAGGAACCAAGGCAAAGCCTGTAGACTCAGGAAGCTAAGTGGCCAGAGACTATAGTGGCCAGTCATCCCATGTCCACAGAGGATCTTGGTCCAGAGCTGCCAAAGTGTCACCTCTCCCTGCCTGCACCTCTGGGGAAAAGAGGACAGCATGTGGCCACTGGGCACCTGTCTCAAGAAGTCAGGATCACACACTCAGTCCTTGTTTCTCCAGGTTCCCTTGTTCTTGTCTCGGGGAGGGAGGGACGAGTGTCCTGTCTGTCCTTCCTGCCTGTCTGTGAGTCTGTGTTGCTTCTCCATCTGTCCTAGCCTGAGTGTGGGTGGAACAGGCATGAGGAGAGTGTGGCTCAGGGGCCAATAAACTCTGCCTTGACTCCTCTTAGCCTGACAGCCTGGCTCCTTGCCTACCTCCTTCCCCTCTAGCCCCTTTCGCTTAGCCCTTGGGATAAGCCCTTAGCCAGTCCTCTTTTCCAAAGCTCTGCCTTCCTATAACTCCTTAGGAGAGACTCCCACCAGATCTGACAGGATGTTAAACTTTGGAACTTAACCTTTAAAGTAAGCATGTGGCTTTGGGCAAGTGTCTCCTGAATTATGGGGGTAATTAAGGGATTCAGAAACTACACAAAGCCATTAGGAGTGGGAGGATACTTGGCGTCTTTGAGGGAAAGCCCTCCCCTGCACAGAACTGTCCATGGACCCATGCGCTGTTGCTCCATCTTCTGCCAAATGACCCATTGGAGCCTCCCCAGCCCTCTGAGGCTTTCTATGAAAGTTTCATGTCTAAGCTCTGTCTTCTTGGCCAGGAGGCCTCTGCACCCGGGCTGAGACTGACAGGCACCTTTAGGATGATGCATCTGATCCAGACAGACTGCCTGACCTCCTCAGGCAACCCTAGCCAGTCAGCAGCACATTGGTCCAGAGTCCTCCAGCCTGGGAGTCCCTGGGAAGTACAGAGGGTCCTAACAGCCCAGGGTGGACTGCTCAAGGGCCCTCCTCCACTGTTGGACCTTCTCCTGTATCTGTGAGGTCAATTTCTTGAGTTCTGAGATGGTTTTGTGTGGTCCTGATTGCCATTTTACTTGGGTACGATGTGGAGAATGGCTTTGACCTCAGGATCTTTCTGCTTCCTCCCAGGTGCTGGGATGAAAGACATCTGGCTTGAGTGGTTTTGTTGTGGTTATGTGCGCATGACTCAGGTTTCTGCAAACATGAGTCCAGAGGCCTCAGAATCCCCTGGAGCTGGAATTAAAGGGGGGGGGGGTTCTAGGAGCTAACCTGGGTCTCAAAGCACATTTTTTTGGGGGGGGGTGTTGATTGGTGTTCAAGACACAGTTTCTCTATGTAACAGCTCTGAACTTACAAAGATCCGCCTGCTCCAGAGTGCAGAGATTAAATGTGTACCACCACCACCCTGGCTTGAAGCAGGTCTTATAAATGGACTATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059316-Slc27a4:NM_011989:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=FE(64.5=100)
A:
NA
C2:
PF131931=AMP-binding_C=PD(3.9=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: