HsaINT0152125 @ hg19
Intron Retention
Gene
ENSG00000167114 | SLC27A4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:HGNC Symbol;Acc:10998]
Coordinates
chr9:131117929-131123749:+
Coord C1 exon
chr9:131117929-131118075
Coord A exon
chr9:131118076-131122612
Coord C2 exon
chr9:131122613-131123749
Length
4537 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CTTCTTCCCTGCTCTCCCAGGAA
3' ss Score
10.15
Exon sequences
Seq C1 exon
GAACCGAGGGCCGGGCCGGAATGGCTGCTGTGGCCAGCCCCACTGGCAACTGTGACCTGGAGCGCTTTGCTCAGGTCTTGGAGAAGGAACTGCCCCTGTATGCGCGCCCCATCTTCCTGCGCCTCCTGCCTGAGCTGCACAAAACAG
Seq A exon
GTGTGTCCCTCCCCTGCTCCAGCTCTCGGATCCCAGGTCCCTTCCCGTTTCCTTCTGGAGAGACCCGGTTGGCTGTTACTTGACCTCTGCACACAGCCTGGCCGGGCAGTTGGTAAAGTGACCTGCCTGTGTAGAGGTGAGCAGACGGGGCTGGCAGAGAAGACACACATTGTTCCTTAGTAGAACACATATTAGGTGCCAGGCACAGCGCTAAGCCTCGGGATACGGCTGGTGAGCTCTGGATGTTTTGCCTTCTTGGAGTTTTAGAGCAGGAGAGAGGCTGGCCTAGGACAAGGCATTCCAAAGGTAAAGAATCGACCACATAATCTGTCATGAGATTAGAGTTAAACAGATAAAAAGAAAAATGAACCACAGAGCAAGCTGATAGGAAAGCAAAAAGGTGGGACGCTTGGGATGACTAGAAGGCTCCTCTGAGGAGGGGATGGTTCAGCTGAGACCTGAATGAAAGGAAGGACTTTATGGCGGTGGGAGGCACTCTAGGCTGCAGGAATAGACACTGTAAAGCCCCCGAAGCAGGAAGGAGCTTGGGTGCTGGAGGAACGAAAGGGGGCCCCCAAGGCTGGAGCCAAGTGAGAGGGGCAGGCAGTGGCATGAAGTGGGAGAGAAACCAGCAGGGGCCAGAAGCCCAGGGCCTTGCAGGCCAGGGTAAGAGTCGGGACTGTCCCGGGGGCAGTAGGGAGCCACAGAAGCATCTCAGCAAGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCGGCACTTTGGGTGGGAGGCCAAGGCGGGCAGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGCCCAACATGGCAAAACCCCGTCTCCACTAAACATATAAAAATTAGCTGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTAGGAGGCCAAGGTGGGCGGATCATTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAATGCCATCTCCACTAAAAATACAAACATAAAAATAAAAAAATTAGGCTGAGCATGGTGGCTCACACCTGTAATCTCAGCACTTTGGGAGGCCAAGGCAGATGGATTGCCTGAGCTCAGGAGTTTGAGACCATCCAGGGCAACATGATGAAACCCCGTCTCTACCAAAAATACAAAAAAATTAGCCAGGTATGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGCAGCAGGAGGATCGCTTGAGCCCCGGAGGTGGAGGTTGTAGTAAGCTGAGATCACGCCACTGCACTCCAGCTTGGGCTACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAATTAGCCAGGCATGGTGGTGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCATGAGAAGCACTTGAACCTGGGAGGTGGAGGTTGCAGTAAACCGAGACCGTGCCACTGCACTCCAGCCTGGGAGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTGGTGGTACATACCTGTAATCCAGCGACTCGGGAGGCTGAGACAGGAGAATTGCTTGAACCCAGGAGACCCAGGAGCCACAGGTTGCAGTGAGCTGAGATCATGCCACTACACTCCAGCCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAGCATCTTAGCAGGTGGGAACCTGGTCAGACTCATGCTCTACAAAGCTCTCTGGCTGCTGTGTACGGAGTGGGAGAGGATTGCAGGCAGCCCTGAGGGAGCTGGGAGACGAGGGAGGGGCTGTTGCAGTTGTCCAGGTGGGAGGTGGGCAGCGGGCCCGCAGTCGCCCACAAGGCAGCACCATCTTTCTATCTGTTGGCCCATTGGTGGCTCTCAAGAGTTCCCTGGTGGGCAGGAAATGCTGAGGCTCATGCCCATACCTGCCCCTGCTTTCCTCAGCCCTTGGTGCCTCTTCTGGGCCCTCCCTGGCTGCTCACCCTTTGGAGCACATTTCCCTGGCCACCTCCCACGTTGTCGTCATATCAGTCCTGCCTTGATGGTGGGCACTCCCTAGCCAATGTGGCTTCTGCCAGAGAGTGGGTACCTGGAGTGCCTAAAGCATCGGGGAGGGTTTAGGACTTCAGTGTGGTTCTGAAGGTTGGAGACACTGTGGCCAGGCTAATGGCCAAGACCATGAGCTTCCGGAGGATTGAGCAGCACCATACTTCTGTCCAGGAAAGGCAGGGAGGCTCTCAGACCTTGTATTTCAGATGGGCTTTGCTGCAGAACAAACCACCCCCAAACTTACTTGCCCCAAAATGGCTCGAAACAACCAGTTTATTGATGCATAATTCTGTGGGTAAGCAATTTAGGGGTTAAGTGCAGCTGAGCAGTTCTTCTATTGACCTTGCTTTGGGGTCATCACTTAGTAACTTAGCTGGGGCAAGAGGCAGTTAGATGGCCTCACCCACGTGTCTGGCTCTCGGCTGCTTACCTCTGCAGCACTGTCCAACAGAACTTTCTGCAGCGATGGAAATGTTCTAGGTTTCTGCTGTCCAACACAGTAGCCACTAGCCTGGCAGAGCTACTGAGCACTTGAAAGGTGGCTGCTGGCTGGACGCCGTGGCTCACGCCTGTAATCCCAACACTTTGGGATTAAATTTTGTTTAATTAACTTAAATTTATTTATTTATTTGAGATGGAGTCTTGCTCTATCGCCCAGGCCGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTTTGCCTCCTGGGTTCAAGTGATTCTCCTGTCTCAGCGTCCCCAGTAGCTGGGATTACAGGCACGTGCCACCACACCTGGCTAATTTTTGTATTTTTTTTATTAGACATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCACCCTGGCCTCCCAAAGTGCCGGGATTACAGGCGTGAGCCACCATGCCTGGCCTTGTTTAATAATTTAAATGTAAATAGCCACATGAGGTCATATTGGACGGCGCCGGTCTGGGCCCTCACCTGGGATGGCTCATCTCTGCTCCACGTGGCCTCTCACCCTTTGGAAGGCTAGACTAGCCCCAGGGCACCCCCAAGCAGGTAGAGGTGGAAGATGCAAGGTCCCCCGAGGCCTAGACTCACCCAGAACTCCTACAACATTGCTTTTGCCACCTTCTGTTGGTTAAAGCAAGTTGTAAAGCCAGTCCAGATTGAGGCCAATGGAGATTGAAAAAGTCGAGCTCTTGCCAGGAGAAGTGCCAAAGCCACATAGCAGAGGTGTGTGTGTACAGGGAGGGGAGGAATCTGCAGCCATTTTTGGTAGTCTGTCTCATCCAGGTTCCAATCCCAGTTCTACCACCCTGAGCATCAGTCTTCTCATCTGTACAGGATTAATACCATTGATTGAAAGATGCGGCCAGGCGTGGCAGCTCATGTTTGTAATCCTAGCACTTTGGGAGGCTGAGGCAGGTAGCTCGCTTGAGCCCAGGAGTTCAAGATCTGGGTGGGCAACATGGCGAAACCCCATCTCTACAAGAAATACAAAACTTGGCCAGGCGCAGTGGCCCACGCCTGTAATCCCAGCACTTTGGGAGGTCGAGGAGGGTGGATCATCTGAGATCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGTGGGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCCTGAACCCGGGAGGCCGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCATTCCAGCCCCGGTGACAGTGCAGGACTCCGTCTCCAATAAAGAAAGAAAGAAAGAATTACAAAACTTAGCCAGGCACAGTGGTGCACACCTATAGTCCTGGCTACTTGGGAGGCTGAGGTAGGAGGATCACTTGAGGTCGGCAGGTGGAGGTTGCAGTGAGTTGAGATGGCATCACTTCACTCCAGCCTGGGTGATAGAGTGAGACCCTGTCTCAATAAAAAAGAAAAAAATACCATGAATTTTTTATGTACGAGTAAGAAAATATGTGCTGCTAATTATACTAGTTCAGAGATGTTAAAATCTGCAAGCACGTCCGTGTTAGAATCCAGAGAATACGGTTGAGCACCTGCCTTATGGGGCTGATGTACAGATGAAATAAGCTCACACTGTTACCTGGTAGGTACTCAAAGGGAGACATCACAGTCAGAAGACCTCCGTTCTGGTCCCCACTCTGCTGTCACTCAGCATGTGACACTAGGCAAATAGCCTCCCTTCTCCAGGCCTGTTTTCCCATCTGCAAAGTAGGGGTGGGTGGGTAACTAGCAGCTGTCCCCATGCCCCAACTTTGCCACAGCTGCTGTATGACCATTCTTTGCAAACTGTAAAGGGCTGTGCCTCCTCCCCCACTTCCCTCCCCTGTTTGTCCTCCAGCCCTGCTCCCTGCCTTCCTCAGTACTGGTGGTTGGGAAGCTGGGAGCTCGGGCCCCTGCCCTGCACTGAGTCTTCTTCCCTGCTCTCCCAG
Seq C2 exon
GAACCTACAAGTTCCAGAAGACAGAGCTACGGAAGGAGGGCTTTGACCCGGCTATTGTGAAAGACCCGCTGTTCTATCTAGATGCCCAGAAGGGCCGCTACGTCCCGCTGGACCAAGAGGCCTACAGCCGCATCCAGGCAGGCGAGGAGAAGCTGTGATTCCCCCCATCCCTCTGAGGGCCGGCGGATGCTGGATCCGGAGCCCCAGGTTCCGCCCCAGAGCGGTCCTGGACAAGGCCAGACCAAAGCAAGCAGGGCCTGGCACCTCCATCCTGAGGTGCTGCCCCTCCATCCAAAACTGCCAAGTGACTCATTGCCTTCCCAACCCTTCCAGAGGCTTTCTGTGAAAGTCTCATGTCCAAGTTCCGTCTTCTGGGCTGGGCAGGCCCTCTGGTTCCCAGGCTGAGACTGACGGGTTTTCTCAGGATGATGTCTTGGGTGAGGGTAGGGAGAGGACAAGGGGTCACCGAGCCCTTCCCAGAGAGCAGGGAGCTTATAAATGGAACCAGAGCAGAAGTCCCCAGACTCAGGAAGTCAACAGAGTGGGCAGGGACAGTGGTAGCATCCATCTGGTGGCCAAAGAGAATCGTAGCCCCAGAGCTGCCCAAGTTCACTGGGCTCCACCCCCACCTCCAGGAGGGGAGGAGAGGACCTGACATCTGTAGGTGGCCCCTGATGCCCCATCTACAGCAGGAGGTCAGGACCACGCCCCTGGCCTCTCCCCACTCCCCCATCCTCCTCCCTGGGTGGCTGCCTGATTATCCCTCAGGCAGGGCCTCTCAGTCCTTGTGGGTCTGTGTCACCTCCATCTCAGTCTTGGCCTGGCTATGAGGGGAGGAGGAATGGGAGAGGGGGCTCAGGGGCCAATAAACTCTGCCTTGAGTCCTCCTAGCCTGTGTGCAAACCACCCAAGCCCACCCTGACCCCAGAACCCCACAGCCCCACTGTGGCCGCTTGATCCCCCACGCCAACCCCCTGGCCCATTGACCCGCCTCATCTGTTCATTCACTTATCTAAGCTGAGGGTGTAGCAGGTAAGATGCCGCAGCCCCTGCCTCCAATGTGCTGGTTCAGCCGGGGGCAGTGCCCATGTGAATCTGGCAAGGTGTTTAACAGTGTGGGCTTGAAAGTCCAAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167114-SLC27A4:NM_005094:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=FE(64.5=100)
A:
NA
C2:
PF131931=AMP-binding_C=PD(3.9=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)