BtaINT0134984 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015436 | SLC27A4
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 4 (SLC27A4), mRNA. [Source:RefSeq mRNA;Acc:NM_001075667]
Coordinates
chr11:98966431-98966942:+
Coord C1 exon
chr11:98966431-98966640
Coord A exon
chr11:98966641-98966815
Coord C2 exon
chr11:98966816-98966942
Length
175 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
CCAAGGCTTGGCCTTCGCAGGTG
3' ss Score
4.93
Exon sequences
Seq C1 exon
ATCGTGCAGTACATCGGCGAACTGTGCCGCTACCTCCTGAACCAGCCACCCCGGGAGGCGGAGGGCCAGCACCGGGTGCGCATGGCACTCGGCAATGGCCTCCGGCAGTGCATCTGGACCGACTTCTGTAGCCGCTTCCACATCCCCCAGGTGGCCGAGTTCTACGGGGCCACGGAGTGCAACTGCAGCCTGGGCAACTTCGACGGCCAG
Seq A exon
GTGCGGCCCAGGGTGTGGACCCAGCGGGCCCACGGGAGACACGGAGGTGGAGGGGAGGGCGGGCTTCCGGCATGGAGTGCGGTTGCAGGAGCCAGAGCCCCGCTCGCAGCCCCCCAGGCTGTCCAGTTTGAGGCCCGTAGTGGGAGAGCCCGGGCCCAAGGCTTGGCCTTCGCAG
Seq C2 exon
GTGGGGGCCTGTGGCTTCAACAGCCGCATCCTGTCCTTCGTGTACCCCATCCGGCTGGTTCGCGTCAACGAGGACACCATGGAGCTGATCCGGGGCCCTGACGGCCTTTGCATTCCCTGCAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015436:ENSBTAT00000020526:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(15.9=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTACATCGGCGAACTGTGC
R:
GTACACGAAGGACAGGATGCG
Band lengths:
249-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development