GgaINT0124109 @ galGal4
Intron Retention
Gene
ENSGALG00000004965 | SLC27A4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:HGNC Symbol;Acc:HGNC:10998]
Coordinates
chr17:4976161-4976710:-
Coord C1 exon
chr17:4976501-4976710
Coord A exon
chr17:4976288-4976500
Coord C2 exon
chr17:4976161-4976287
Length
213 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGG
5' ss Score
7.34
3' ss Seq
CTGAGCACATTCTGTCCTAGGTC
3' ss Score
7.2
Exon sequences
Seq C1 exon
ATTGTGCAGTACATTGGGGAGATCTGCCGCTACCTGCTGAACCAGCCCTACCAGGAGGTGGAGCGGCAGCACCGGGTGCGCATGGCGCTGGGCAATGGGCTGCGAGCTTCCATCTGGCGAGAGTTCATGGCCCGCTTTGGCATCGCCCAGGTGGCTGAGTTCTACGGGGCCACCGAGTGCAACTGCAGCCTGGGGAACTTCGATAATAAC
Seq A exon
GTAAGGCTCTGCCACCCTCCCCATGCCCCAGAGGGTGCCTGCTGGCCTGGCGGGGGTTGAAACCCAGCAGGGCTGTTTGCTGCAGGTTCCTTGTTCCAAGAAGCATGGCGTGCGTTAAGATCTGCCTGCAGGGTTTTGACTGTGCTTTTGTGGTGCCAGCTTGGGGCAAGAGAGATGTTCCTGCTACGCATCTCTGAGCACATTCTGTCCTAG
Seq C2 exon
GTCGGGTCCTGTGGCTTCAACAGCAGGATCTTGCCAGGAGTGTACCCCATTGGCTTGGTGAAAGTGGATGAAGACACCATGGAGCTGATCCGGGGGCCGGATGGTGTCTGCATCCGCTGCAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004965:ENSGALT00000007962:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(15.9=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATTGGGGAGATCTGCCG
R:
CGGATCAGCTCCATGGTGTCT
Band lengths:
294-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]