DreINT0150337 @ danRer10
Intron Retention
Gene
ENSDARG00000017047 | slc27a4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-050417-248]
Coordinates
chr10:10813687-10815842:+
Coord C1 exon
chr10:10813687-10813896
Coord A exon
chr10:10813897-10815715
Coord C2 exon
chr10:10815716-10815842
Length
1819 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
ACATGATGTTTTAATTTCAGACA
3' ss Score
7.12
Exon sequences
Seq C1 exon
ATTGTGCAGTACATTGGTGAAATCTGCCGCTATCTGCTGAACCAGCCCAGAAAGGACACGGAGCGCAAGCACAAAGTGCGCATGGCACTCGGGAACGGCCTTCGCCAGTCCATCTGGGAGGAATTCACCAACCGCTTCAATGTACCACAGATCGCTGAGTTTTACGGTGCCACTGAGTGCAACTGTAGCCTGGGCAACTTCGACAACAAG
Seq A exon
GTCTGTTCATACAAAAACACACTTTAGACTGAGTGTCTGTACACAGTCTTTATGAGCAGTACTCTTGTAAATCATTACAACACTGGATAATGCATGTGGAAATGGATAGATGCACTTTTGGGGGTTGTGGCAATTTGTGCAGTACCATAAACTTTATGAGGCCATCATAAACTAGCATGTATGCTTATGGAATATTTAAAGAGATAGTTTACCCAAAAATGACAGTTTAAAGATAATATACACACCCACAGACATTGTAGACGACGTTTCTATTTTTTTAAATAGAGCATAAAGAAGATTTTTAGCTGAAGCCATGGTCCTTGGTGATTCATATAACATATGTTAGCAGATACCAAAACTTTGATAGTCAAAAAAATGTATAGGCTAAGCAAAATGAATACATGTGTCTACTGATGATACACTGAGGTCTTATGAAGTAGAATGGAACATTCTTTACAATGTTATTACCTGTAACTAGGTATGGGCCAGTATAAGATTCTGACGGTATGTAACCTTGGATATAAATATCACGGTATTTAGATTACTGCTCTAAATATATTATTTTTAAATGTCTGGGTGACATTTGTACACAATATATTTTAATTTGGCAAAAATTAAAAATATTTTTGGAGCAGTAAACGTGTCAGGCTAAATAATTTAAATGAATTATGGACTTCTGCTGCCTTAATTTGTTTAAAAAAACACAGATTTTTTTTAACTATTTAAAACAGCATCTTTGGAGATCTTTTCTGCTGGAGATACTGCTGTCCTATAAAAAACTAAAAATCTACATAAAAAAATCTTACTCATACCTTAGGTATGGTCTAACAGAAAATTTTGACTGTTTTAAAACTGTTTTTAACTGTTTTTGACTGTTTTTAAAAGACTTTTCCAAACCGTGGTATACCTTGAACACGGTATATTGAATTTACACTTTTTTTGTAAAAATCACACAATCTTGTGTGTATCCAAATTGCTTCATCCTATTTTAATATGTTGCATTTTTGGTCATTAAAAGTCAATGTGAGCAGGATCTGGTCGGAGCTGGTTGTGGAATTTCAAAATTTATCCAAAACAAAAGGATATGATTGGCTGAGATTGGCAATAAAAATTTAGAATTAATTAACTGGCTTAGCTAAGAGCTTTGGAAGAATGTTTTAAAGAGGTCAGTTTCAGCTTACATGCGAGTTTGCACCTGCAGTTGAAACTAAATTATTAGCTCTTTTTCACATATTTCCCAAATAATGTTTTATAGCAAATATATATATATATATTTTTTTTACTGGAGAAAAATCTTTTGATTGTATTACAATGATTTTAAACATTTAAAAAAATATAATTAAATAGAATTAAACAGATATATAAAAAAAAAATCAGATATAATTTTTTCCTGATTGGCTACAGAACAAACCACCCTTGTCTAATGACTTGCTTAATTAACCGAATGAACCTAGTTAACCTAATTAACTTAGTAAGGACTTTTATATGGCACTACTAGTATCTTATAAAACCACTATTATGTACTGTCATCGTGGCAAAGACAACTGAAATTAGTGGTTAAATTATTGTTTAAAAAGATCTTGGAAACAAATATTCTCTCCATTAAGCAGCACTTAGGAAACCTTTGAAAAATGTATAATTTGGTCTTCAACTGTACAATTATTATGCGCTCCAGTCACTAATTCTCTTGGATAAAAGATAATAATATTGATAATACTGTAATGTTGACTCTTTAAGATAATTGAAAAAATAGTTGCTTGATATAGTGTTTACAGTAGTTTTGCAATTCTAATGAGAACACATGATGTTTTAATTTCAG
Seq C2 exon
ACAGGTGCTTGTGGATTTAATAGCCGAATCCTGCCCTATGTCTACCCTATCCGCTTGGTCAAAGTGGATGAGGAGACCATGGAGCTCATCAGAGGACCTGATGGAGTCTGTATCCCATGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017047:ENSDART00000004181:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(15.9=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTACATTGGTGAAATCTGC
R:
CTGGACCGCATGGGATACAGA
Band lengths:
334-2153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]