BtaINT0135280 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40240514-40240940:+
Coord C1 exon
chr7:40240514-40240642
Coord A exon
chr7:40240643-40240790
Coord C2 exon
chr7:40240791-40240940
Length
148 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TGATCAGCCTTGTTCCCCAGTCT
3' ss Score
4.76
Exon sequences
Seq C1 exon
GCCCACAGTGTGCACTTGAGATGATGTCTTATGGAGAGAAGGTGGGAGGCCGGGCTGTCTCCCCACTCCCAGTCCGTGGTGGGCACATGATGCATGGAGCGGCCTTTGCCTATGTGCCCAGCCCACAGG
Seq A exon
GTGAGTGCTACTCCCACCCCGGACCCTGTTTGCCCTCTGTTGCATATGGCCCCACCCCGGAGGGAGGCCTCTAGCCCTCCGCCCAACCCTTCCAACCCTCCCTGGGACATGAGGCCTCAGGCAAATCCTGATCAGCCTTGTTCCCCAG
Seq C2 exon
TCTTGCACAGGATTCCAGGGACCTCGGCCTATGGCTTCCCCAGCGTGGGCCCCGTGGCCCTCCCAGAGCATGGCTGCCCCTATGGGGAGGTTGTGGAGCACCATGACCCACTGCCTGCCAAGCTGGCCCTGGAGGATGAGCGGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351:ENSBTAT00000027121:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGAGAGAAGGTGGGAGGC
R:
CTTCCGCTCATCCTCCAGGG
Band lengths:
246-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]