HsaINT0152500 @ hg19
Intron Retention
Gene
ENSG00000131183 | SLC34A1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:HGNC Symbol;Acc:11019]
Coordinates
chr5:176812696-176813137:+
Coord C1 exon
chr5:176812696-176812851
Coord A exon
chr5:176812852-176812987
Coord C2 exon
chr5:176812988-176813137
Length
136 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TGACCAGGCTCCCTCCCTAGTCC
3' ss Score
6.77
Exon sequences
Seq C1 exon
CGTTGCTGAGACCCACTGACCTGCAGACCTCATAGTGGGTGCCCAGGATGTTGTCCTACGGAGAGAGGCTGGGGTCCCCTGCTGTCTCCCCACTCCCAGTCCGTGGGGGGCATGTGATGCGAGGGACGGCCTTTGCCTACGTGCCCAGCCCTCAGG
Seq A exon
GTAAGTGCTGCTCCCACACCCTGGACCCTGGTTGCCCACGGTTGCCCACATCCCGGATGAGGCCACTTCCCCCGCCTGTTCCTCCCCGCCTCCCCACTTTGGGGCCCTGGGGCTCCTGACCAGGCTCCCTCCCTAG
Seq C2 exon
TCCTACACAGGATCCCGGGGACCTCTGCCTATGCCTTCCCCAGCCTGGGCCCTGTGGCCCTTGCTGAGCACACCTGCCCCTGTGGGGAGGTCCTGGAGCGCCATGAACCACTGCCTGCCAAGCTGGCCCTGGAGGAGGAGCAGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131183-SLC34A1:NM_003052:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTCCTACGGAGAGAGGCT
R:
CTTCTGCTCCTCCTCCAGGG
Band lengths:
253-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)