MmuINT0146261 @ mm9
Intron Retention
Gene
ENSMUSG00000021490 | Slc34a1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:MGI Symbol;Acc:MGI:1345284]
Coordinates
chr13:55501798-55502198:+
Coord C1 exon
chr13:55501798-55501927
Coord A exon
chr13:55501928-55502048
Coord C2 exon
chr13:55502049-55502198
Length
121 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TAATCAGTCTCCCTCCTCAGTCC
3' ss Score
5.96
Exon sequences
Seq C1 exon
GACTCATTGTGGGTGCCCAACATGATGTCCTACAGCGAGAGATTGGGGGGACCGGCTGTCTCCCCACTTCCAGTCCGTGGGAGACACATGGTGCATGGGGCAACCTTTGCTTATGTGCCCAGCCCACAAG
Seq A exon
GTAAATATTACTCCTATACCCTGAGACCTGCTTGCCCACAGTTGGCTACCTGCTGTCCCTCTACCTGTTTCTTCTGGGTTGCTGAGGCCTCTGGGAAGTCCTAATCAGTCTCCCTCCTCAG
Seq C2 exon
TCCTGCACAGGATTCCTGGAACATCCACCTATGCCATCTCCAGTCTGAGCCCGGTCACCCTCACAGAGCACAGCTGTCCCTGTGGGGAAGTCCTGGAATGTCATGACCCACTACCTACCAAGCTGGCTCAGGAAGAGGAGCAAAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021490-Slc34a1:NM_011392:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.255
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTACAGCGAGAGATTGGGG
R:
TGGCTTTTGCTCCTCTTCCTG
Band lengths:
252-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: