BtaINT0135281 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40240791-40241153:+
Coord C1 exon
chr7:40240791-40240940
Coord A exon
chr7:40240941-40241024
Coord C2 exon
chr7:40241025-40241153
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TCACAACCACCTGTCTCCAGAAC
3' ss Score
6.28
Exon sequences
Seq C1 exon
TCTTGCACAGGATTCCAGGGACCTCGGCCTATGGCTTCCCCAGCGTGGGCCCCGTGGCCCTCCCAGAGCATGGCTGCCCCTATGGGGAGGTTGTGGAGCACCATGACCCACTGCCTGCCAAGCTGGCCCTGGAGGATGAGCGGAAGCCAG
Seq A exon
GTGGGCCTGGGTTGGGGTAGCAGGGGTGTTGGCAGTCATTGGCAGAACCCTCTACCCCCTGCACTCACAACCACCTGTCTCCAG
Seq C2 exon
AACCCGGACTGGTCCAGAAGCTGCACCGGGCTGGCGTGACTCTCCTCAAGGTGCCACTGATGCTTTCCTTCCTCTACCTCTTCGTCTGCTCCCTGGACGTGCTCAGCTCGGCCTTCCAGCTGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351:ENSBTAT00000027121:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(11.7=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCACAGGATTCCAGGGAC
R:
GTGCAGCTTCTGGACCAGTC
Band lengths:
175-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]