RnoINT0137602 @ rn6
Intron Retention
Gene
ENSRNOG00000015262 | Slc34a1
Description
solute carrier family 34 member 1 [Source:RGD Symbol;Acc:3708]
Coordinates
chr17:9761455-9761821:-
Coord C1 exon
chr17:9761672-9761821
Coord A exon
chr17:9761584-9761671
Coord C2 exon
chr17:9761455-9761583
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CATGCCTGCCCCACCTCCAGAGC
3' ss Score
8.53
Exon sequences
Seq C1 exon
TCCTGCACAGGATTCCTGGGACAACCACCTATGCCATCTCCAGTCTGAGCCCGGTAGCCCTCACAGAGCACAGCTGTCCCTATGGGGAGGTCCTGGAATGTCATGACCCGCTCCCTGCCAAGCTGGCCCAGGAAGAGGAGCAAAAGCCAG
Seq A exon
GTGGGCCAAGTTGGGGGGGGCAGTGGAGATATGGGAATCCCTTGCTCTAGTGTTCTTTCTACTGTGTTCATGCCTGCCCCACCTCCAG
Seq C2 exon
AGCCCAGGCTGTCCCAGAAGCTTGCCCAGGTTGGCACAAAGCTCCTGAAGGTGCCGTTGATGCTAGGCTTCCTTTACCTCTTTGTCTGCTCCCTGGACGTGCTCAGCTCTGCCTTCCAACTGGCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015262:ENSRNOT00000033749:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(11.7=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAATGTCATGACCCGCTC
R:
CAGTTGGAAGGCAGAGCTGAG
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]