MmuINT0146262 @ mm10
Intron Retention
Gene
ENSMUSG00000021490 | Slc34a1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:MGI Symbol;Acc:MGI:1345284]
Coordinates
chr13:55400688-55401053:+
Coord C1 exon
chr13:55400688-55400837
Coord A exon
chr13:55400838-55400924
Coord C2 exon
chr13:55400925-55401053
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CATGTTTGCCCCACCTCCAGAGC
3' ss Score
7.89
Exon sequences
Seq C1 exon
TCCTGCACAGGATTCCTGGAACATCCACCTATGCCATCTCCAGTCTGAGCCCGGTCACCCTCACAGAGCACAGCTGTCCCTGTGGGGAAGTCCTGGAATGTCATGACCCACTACCTACCAAGCTGGCTCAGGAAGAGGAGCAAAAGCCAG
Seq A exon
GTAGGCCAAGTTGGGGAGCAGTGGGATTATGGGCGGTCACTTGCTCTAGTGTTCTGTCCACTGTCTTCATGTTTGCCCCACCTCCAG
Seq C2 exon
AGCCCAGGCTGTCCCAGAAGCTTGCCCAGGTTGGCACGAAGCTCCTGAAGGTGCCTCTGATGCTGGCTTTCCTTTACCTCTTTGTCTGCTCCCTGGATGTGCTCAGCTCCGCCTTCCAGTTGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021490:ENSMUST00000057167:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(11.7=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGGAAGTCCTGGAATGT
R:
TCCAGGGAGCAGACAAAGAGG
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types