BtaINT0135305 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046379 | SLC34A3
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr11:105868665-105868989:-
Coord C1 exon
chr11:105868846-105868989
Coord A exon
chr11:105868777-105868845
Coord C2 exon
chr11:105868665-105868776
Length
69 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CTGACGCAGCGCCCCCACAGTGC
3' ss Score
1.88
Exon sequences
Seq C1 exon
GCAAAGTAACCGGAGACATCTTCAAGGATAACGTGGTGCTGTCCAACCCTGTGGCTGGACTGGTCATTGGCGTGCTGGTCACAGTCCTGGTGCAGAGCTCCAGCACGTCCTCCTCCATCGTGGTCAGCATGGTGGCCTCCAAGC
Seq A exon
GTGAGTGCCCCTCCCCTCCGGGGATGGTTGGGGGGGTGGGAGTGGCTGGCTGACGCAGCGCCCCCACAG
Seq C2 exon
TGCTGACCGTCCGGGCCTCTGTGCCCATCATCATGGGTGTCAACGTGGGCACATCCATCACCAGCACCCTGGTCTCGATGGCACAGTCAGGGGACCGGGACGAGTTTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046379:ENSBTAT00000063824:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(32.7=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATAACGTGGTGCTGTCCAA
R:
CCACGTTGACACCCATGATGA
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development