HsaINT0152529 @ hg38
Intron Retention
Gene
ENSG00000198569 | SLC34A3
Description
solute carrier family 34 member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr9:137232784-137233115:+
Coord C1 exon
chr9:137232784-137232927
Coord A exon
chr9:137232928-137233003
Coord C2 exon
chr9:137233004-137233115
Length
76 bp
Sequences
Splice sites
5' ss Seq
AGCGTGGGT
5' ss Score
1.59
3' ss Seq
CTCAGCCCCCCCACCAGCAGTGC
3' ss Score
3.23
Exon sequences
Seq C1 exon
GCAAAGTGGCCGGAGACATCTTCAAGGACAACGTGGTGCTGTCCAACCCTGTGGCTGGACTGGTCATTGGCGTGCTGGTCACAGCCCTGGTGCAGAGTTCCAGCACGTCCTCCTCCATCGTGGTCAGCATGGTGGCTGCTAAGC
Seq A exon
GTGGGTGCACACTCCCTCCCCGGGTGGTGGGGGGGGCAGGGTGGGCCGCAGGCTGACTCAGCCCCCCCACCAGCAG
Seq C2 exon
TGCTGACTGTCCGGGTGTCTGTGCCCATCATCATGGGTGTCAACGTAGGCACATCCATCACCAGCACCCTGGTCTCAATGGCGCAGTCAGGGGACCGGGATGAATTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198569:ENST00000361134:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(32.9=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(25.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAAGGACAACGTGGTGC
R:
GATGTGCCTACGTTGACACCC
Band lengths:
181-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains