BtaINT0136005 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34678320-34681548:-
Coord C1 exon
chr2:34681448-34681548
Coord A exon
chr2:34678495-34681447
Coord C2 exon
chr2:34678320-34678494
Length
2953 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TGTTTTCCCCCCTGTCTTAGGCT
3' ss Score
9.77
Exon sequences
Seq C1 exon
GAGAAGAGGAAGATTCCTGCTGTACCAAATGGAACAGCAGCTCATGGGGAAGCTGAGCCCCATGGAGGACATAGTGGACCTGAACTCCAGCGAACTGGAAG
Seq A exon
GTTAGTGAAAAGCCCTTGTATGGGACTTCAAAGACCAAATGGTATATCACTTTTGTGTTGGGAATTACTGTTTTGAGGACTAATTTGTTTTTATACTTTGAATACCTACTCTTTGGGGGTAAATATGCTAATAAATTTGATATCTCATCATTAATGATTGTCATTATTATTAAACCAGAACAGTGAATACACCATTCCATTTTATATACGTAGTCTTTCACACTGCTGTGCATAAAACACATTCACAGATTCTTAGAATAAATGAGAAAACTGTCAGTTGCCCCTTCCAAAAGAGCCTGTTGAAAACTTCAAGTTCAAAATGGAAACGAAAATAAATACCAAGAATTCAGTCTTATAGACCCTGTTTCATTACATGCAAGTGCGATGTATATAATAATATTTTTTATTTTTATGATAGTAATCTGAAAGAGCTATATGATTTATTTTTCTAATCACACATCTTTGAAGAGATGAAAGCTTCAATTTATTTCTTAAAATGATTTTTAAGTTTTTTTTTGACAGCTTGTCTCTCTCCAAGAAATGTGTGAGCAGAAAATCAGAAACCTTTGGGTGGGTCTCTCTTCAGGGAATATGTGCACACAGCCTCCATTATAATCGAAGGCAATTGCAAAAACTTTGCAGGCTTGGTGCTCCCCTCTCCTCAGGGCCATCTCCTGTACCACTCTCACTGTGTCCTCTAAGCTGACTTTCCAGTTCTTGACAACTCTGTGCATTTTAATTCTCCTCTATTCTTTCCCTTTTTCTATGTTTTGTCTCTAAGGAAATGTCTTCCTCAGTCTGGTACTTAATTTGAGATGATTCAGACAATTTTTTCCCTTTCCCTTTACTGGAAACCTTGTAACTCCTTCTGTTTACTTCCAAATTTTCAAATGCTGTCTTTTTATTTTTGGTGTTATTTTTTTCCCTCTCTCTCAGGTGTAACGTGCCACATAGCTTAGATTTTTTTTTTCAAAGTTCACTTTTCCTTACTGCTTCCTAAATCCTCCCAGGTCACCAATATCCGGTATCTTCGCTTCTCCAGAGTTCTTCCACAGATTCTGTTGCTGACAGGACTTGAAGTATCCATTACTCATCTGCTCTCCTGGAGTTGCTGGTGCACATCTGGGCTGCTCTTGTACTGTTCTCTGCAATGACCTCCCACTTCTGGATTTAGATTTTTGCTGCTAAAAGCACGTTTATTACACTGTAATATAACAGCTATTTAGACTAATGTATGGCCTAATAAGTAATTAATTAGAAAACAGTAGTCTAATAGAAAGTGCTATCAAGCCTATAAATATTAACTACAAAGTGATCGTTCATAACCACTTCACATTCTTTTGGGGATTAGGTGGGATGTAAAAAATAAGTACATGAATAAATAGACTAGTAGATTAAATCTGTTCTGAATTATGACTTTGAGAATTTAACACATCATTCAGAAATGATCCCCCAAATAAAAATTCTGCATGTATTTTACTAAACACAAGTAGGAGAACCTAAACTAAGATGATCTTTGTGTATGTGTGTGAATTTTCATAGGTTCTGTACAAACTTCTCTGAATTTTAAATGTCCCTTTTTTTTTCAATTGAAATTTCATCCTTTTCAACCTCTCCTAGTCCACATCCCTCTGGTGGATGTGGAAAACGTAATGATTTGATTACTCAAATAATAATAAGATAGCTATTAATATGTTATTATTGTGTCTATATCAGGGCAATTAAAAATAATAGAATTTCAGTTATTTTGAAGAGGTACGCTTTTCAAGGCAGATAGGAATTTGCTTCTCAAGAGAACAGTCATTTCTGAAGTGATTCTTAGATTGCCACATTATATTCCTATTAAGAAAACGAAGAACAAACCTTTAATATTTTTCCATAACCCTGGTGTATTTAGCATACTTGCAGTATGTTGAACATAACAGTTTTTTTTAACCTCCATGTAGGAACTTAATCATAGCCTTATTCATTTTAATATGACATCTCTATTCCATAGAGCACAAAGAGCTTTTAGTAGTCAAATGTTAAATCTGCATATTGTTAGTAAATGTTCAAAGAATGAGAATACCTGTTTAATGCTCTCATTCCTAATAGATTAAAAAATTTCATCCTCAGATTTTAGGCATTTCACAATTTAATGCTTCTCCCACTCCCCTCCTCCTACCAAAACATCATCCTTTACATGTTTTTAATGTGTTTTTTGATATTTTTAGAATACATGCATTTACCCAAGTAAGGTCATTATTGTCTTGTTAATTATAGATATTTGAATATGTTTAGCAACAGTGGATCAAAAGTACATTTATCTAGGTTGCTTATTATAAGGCCCCTGTGTTAGTTTTCCAAAGATGAAAACCATAATGGAACTTACCTCTCTCTACTAAGCATTATTGTCGTCCATAAGGCCATTTAAGTGCCTGTATAAAATGTTATTTGGCAAGTGATTTTTTTGACAGAGTGGATAGTTGGAGCCATGGTTATATACACCTTTTCTCTCTAGGTTGATATTCACTATCGGGCTATATAAAAATCAGTTTACCTTCCCTCCTTCACTTTCTGCTACACTAAATGGAATGTAAACAATTCCAATATTGCCAATAACTGAGGATAAGAGGCCTGATTTTAGGACTAGGTTTTTGTAAAATGGAACAGAGATTAGAGTAATCCTTAAATCTCACTGTTTAAATTTTGATTATTGAACAGCTGAGAACCTAGTTTGAGAGAACCTAGGGTTTTTGAGGTTGTTGGCATGATTTTTCGCTAGGAATTGAAGTACCTTAGTGGTACAAAGCTATTCCTGTAGATCATGATGTAGAACCTAGCAGGTTAATACGGGTCTCATCTCTGCTGATGGAAAACCTATACTATGACCTGGCGACAAAGCAAATGAGTATTTTGACATATGTGTTTTTTATCTTTGTATGTCACTATTGTGTTTTCCCCCCTGTCTTAG
Seq C2 exon
GCTTTTTGGGGGACTTATTTTAGATATCAAAAGAAAAGCTCCATACTTCTGGAGTGACTTCACAGATGCTCTCAGCCTGCAGTGTTTAGCGTCTTTTCTGTTTCTCTACTGCGCATGTATGTCTCCTGTCATCACATTTGGAGGACTGCTGGGAGAAGCAACTGAGGGTCGAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317:ENSBTAT00000020366:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]