HsaINT0153319 @ hg38
Intron Retention
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4 member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr2:161900911-161904178:+
Coord C1 exon
chr2:161900911-161901011
Coord A exon
chr2:161901012-161904003
Coord C2 exon
chr2:161904004-161904178
Length
2992 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TGTTTTCCCCCCTGTCTTAGGAT
3' ss Score
10.7
Exon sequences
Seq C1 exon
GAGAAGAGGAAGATTCCTGCTGTACCAAATGGAACAGCAGCTCATGGGGAAGCAGAGCCCCACGGAGGACATAGTGGACCTGAACTCCAGCGAACTGGAAG
Seq A exon
GTTAGTGAAAATCACTTCTATGGGACTTCAAGGACCAAATGACATACCATTCTTCTCTGTCAGAAATTGCTATTTTGGGATCTAATTTATTGTATACTTTTAATACCTGCTTTTTGAGGGTGAAAATGCCAATTAGTTTGATTTCTCTGAAGTTACTAATGATTGTCATTACTGTTAAACTAAAACAGTGGATACACCCTTCCATTATACTTTACCTAGTCTTTCATTTTGCTGTGCATAAAATGCATTCTCAGATTCTTAGAATGAAAAGGAAAACCGTCAATTGACCCTTCCAAAAGAACCCATTGAAAGCTTCAAGTTGAAGATAGAAATAAAACTAAATACCAACAACTCAGTCTTGTAGGCCCTATCTCATTAAATGCAAGTAGGATGTATATAGTGGTATTTTTTATTTTTATGGCTGTGATTTGAAAGAGCTATATGATTTATTTTTCTAATCACACATCTTTGAAGAGATGAAAGCTTCAATTTATTTCTTAAAATGGTGCTTCATGGTTTTTTTGACAGCTTGTCTCTCTCTAAGCAATGTGTGAGCAGAAAATCAGAAACCCTTGGGTGGGTCTCTCTTCAGGGAATATGTGTATAGCCTCCATTATAATTAAAGGCAGTTGCAAAGGCTTTGCAGGATTGGTGCTCCCCTCCCCTCAAGGCCATTTTCTGTACTGCTTGCAATGTGTCCTCTAAGCTGACTTTCCAGTTCCTGAGCACTCTGCATTTTAATTCTGTGTTCTTTCCCTTTATCTATGTGTTGTCTCTGAGGAAATGTCCTTTAATGTCTTCCTCAGGCTTGATACCTAATTTGAGATGGTTCAAACAATTTTTTCCTTTTCCCTTCACTGGAAGCTTTGTTACTCATTCTGTTTGCTTTCATACTTTCAAATGCTGTCTTTTTATTTTTGGTGGTATTTTTTTTCTCTTTCTCAGGTGTAACATGCCACATAGCTTAGATTTTTTTCGAAGTTCACTTTTCCTTACTGCTTCCTAAATCCTCCCAGGTCACCAATATCCGGTATCTTCGCTTCTCCAGAGTTCTTCCACAGATTCTGTTGCTGACATGACTTGAAGTATCCATTACTCATCTGCTCTCCTGGAGTTGCTGGTGTACATCTGGGCTGCTCTTGCACTGTTCTCTGTAATGAACTCCCACTTCCGGATTTAGATTTTTACTGCTAAAAGCACATTTATTACACAGTACTATAACAACTATTCAGACTAATGTATGCTCTAATAAGTAATTGATTAGAATCAATGGTCTAATATAAAGTGCTTTCAAAACTATAAATATTAATTACTAATTAATAGCTCATAACCACCTCAAATTCTTTTTGGGATTAGGTGGGATATAAATCATAAATGAATGCCTAAATAGACTGGTAGAGTAAATCTGTTTTGAATTGTGACTTTGATAAGTTAACAAATTATTCAGAAATGATCCCTAAAATAAAAAAAAGTGCATATGTTTTACCAAACATGGGTAGAGAAGCCTAAGGTGATCTTTATGTGTACAAATATTTCACAGGTTCTCTGCAAGCTTCTCTGAGTTTCAAATGTCCTTTTATTCAATTGAAGTTTCATTCTTCTCAACCCTCTCCTACTCCATAGCTCTCTAATGGAAGCAATCACAGGAAAATATAGTGATCTTATACCTGCATAATAGTAGAAGAGTTATTAATAGGTAACTATTACAGATAAATCAGATCAGGGAAATTACTTGGTAAAATATTTTAATTATTCATAATATGTACATCTTTTATTTCAAATTCTAAGGAGAATTTATTTCTAAAAAGGACAGTCCTTTCTGAGATGATTCTAGGACTGCCAAATGAATATTCCTATGCATAAAATAAATAAGAAAAATGAAACAGTTTTTTATGATCCAAGTATACTCAGCATGCTGGCAGTATATTGGAGCATAATAAGATTTTTCACCACTGACATTAACCTTCATGTAGGAACTTATTCATAGTCTTATTCATTTTTGCTATCACATCATTATTCCATGGAGCAAAACTTACAGTAGCCAAATGTTAAGTCTGCGTATTGTTATTAAATGTTCATAAAATGAGAATACCTACTTATTAATGCTCTCATTTCTTATAGATTTAAAAAAAGATCTCAAATTTCAAGCATAATTTCACAGTTTAATACTTTTCCCCCAAAATAATTATCTTTCAAGTGTTTCAACATGGTTTTGAATATATTTGGAGTAAATGAATTTATACCAAGTAAGGTCACTATTGTCTTGTGAATCACAGATGCTGGGATATGTTAACGCAATAGTGGATCAAAATTACATTTATCTAGTTTTATTATTATAAGGACTCCCTCCTAGTTTTCTAAAAATGAAAACAGCTCTGAAACCTATCTGTCTCTACTAAGTATTGCTGCCATCCAAAAGGACATTTAGATGTCTTCCTGCAACAATATCTGGTGAGGGATTTTTGTTTGTTTGTTTTTTGGCCGAGAGAGTAGGTAACTGGAGCCATGGTTAAACATTGCTTTTTCTCTCTAGGGTGATGCTCACTACTGGAGTATACAAAAGCCAGCTAACCCTCCCTCCCTCACTTCCTGCTATGCTAAATGGAATTAAACATTTAGAAATACTGCCAATGATTGAGGGTTGTAGGCCTGAGTTTAGGAGGAGTAGGTTGACGTAGAAATGGCACAGAGATTAGAGTAATCCTTGAATCTCATTATTTGGATTATGATTGGTAAACAGCTCTGAACCTTGTTTAAGAGAACCTGGGATTTTTGGTGGTTGACACGATATTGGGTTAGGAATTGAGGTAACGAACGTAGTTGTGCAGTGCCTCCCTGTAGATTGTTATAAGACAATGCAGCAGGTTAATGTGTGTCTCACCTCTGCTGATGGAAAACGTATACTGTGACCTGGCAACAAAGCAAATGAGCATTTTGACTTGTGTGTTTTTTATATTTGGGTTTCACTATTGTGTTTTCCCCCCTGTCTTAG
Seq C2 exon
GATTTTTGGGGGACTTATTTTAGATATCAAAAGAAAAGCTCCATACTTCTGGAGTGACTTCAGAGATGCTTTCAGCCTGCAGTGCTTAGCATCTTTTCTATTTCTCTACTGCGCGTGTATGTCTCCTGTCATCACGTTTGGAGGACTGCTGGGAGAAGCAACTGAAGGGCGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290:ENST00000415876:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.886 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains