MmuINT0147080 @ mm10
Intron Retention
Gene
ENSMUSG00000026904 | Slc4a10
Description
solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 [Source:MGI Symbol;Acc:MGI:2150150]
Coordinates
chr2:62263953-62267575:+
Coord C1 exon
chr2:62263953-62264053
Coord A exon
chr2:62264054-62267400
Coord C2 exon
chr2:62267401-62267575
Length
3347 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGC
5' ss Score
3.77
3' ss Seq
ACCCCTACCCCGTGTCCTAGGAT
3' ss Score
7.84
Exon sequences
Seq C1 exon
GAGAAGAGGAAGATTCCTGCTGTACCAAATGGAACAGCAGCTCATGGCGAAGCTGAGCCACATGGAGGACACAGCGGACCTGAACTCCAGCGAACTGGGAG
Seq A exon
GTTAGCGGCAGCCATGTTGGGGGACTTCAATGCTGTCTTATCTGTCAGGAATTGTTGTTTCAAGGTCTAATTTTTTATACATTTAATATCTACTCTTTGAGAGTGAAATGCCAATTAATTTGATTTCTCTGAAGTGAATAATGATTGTCACTTCTGTTAAAACAGAACAGTGGCTACACCATTCCATCTTATTCTAGTCTTTCATTTTATGAAGCATAAAATACATTCACAGAGTCTTAGAATGAATAGGAGAACTGTCATTTGATGCTTCCAAAACAGCTTGTTGAAAGCTTTAAGTTCAAGATGGAAATAAAACTAAATACCAAGAATTAAGTCCTGTAGACCTTACCTCATTAGATTCTAGTATGATGTATATAATGGTATTTTTTATTATTATGCCTGTGATTTGAAAGAGCTATATGATTTGTTTTTCTAATCATACACCTTTGAAGAGATGAAAGCTTCAATTTATTTCATAAAATGTTTTTTATGGGTTTTTGACAGCTTGTCTTTCTGCAAGCAATGTGTGAGGAGAAAATCAGAACCCTTGGGTGGATGTCTCTTCAGGGAGCTGGTGTGGACAGCCTCCCTATAATTAAAGACAATTGCCAAGGCTTTGTAGGATTGGTGGCCCTCCCTTGAGCAATTTTCTGTACTGCGTGCAGTGTGCCCACTGCTGACTTCCCAGTTCCTGACAACCCTGCATTTCTATTCTCCTGTGCTTCCCTTTATGGCTGTTTGTCTCTGAAGAAATGTCCTTAACATCTTCCTTGGCTTCATACTGGTTTTTAGATGGTTCAAGTGTCTCCTTTCCCTTTCCCTGGAAGCTATATACTCATTCTGTTTGCTTTCATACTTTCAATTACTGTCCTTTTTTTATTTTTGATGGTATATACTTTTTCTTTTCCTCTCAGGTGTAACATGCCACATAGCTTAGATTTTTTTTTTTCGAGTTCACTTTTCCTTACTGCTTCCTAAATCCTCCCAGGTCACCAATATCCGGTATCTTCGCTTCTCCAGAGTTCTTCCACAGACTCTGTGGCTGACATGACTTGAAGTTTCCATTACTCATCTGCTCTCCTGGAATTGCTGGTGTACATCTGGGCTGCTCTTGCACTGTTCTTCTGTAATGAACTCCCACTTCTGGATTTAGATCTTTACCGATAAAAGCACATTTATTACACAGCTATCTAACAACTATTCAAACTAATGTATGCTCGAATAAGTGATGACTTACACAGCAGTGGGCTAGTGAAATACTATCAAAACTATAAATATTAATTACTAATTAATAGTTTATAACTCTCTCAAATTATTTTTAGAAATAGGTAGAATATAAATCATAAATGAGTGTGTAGCTCGGCGGAATAAACCTACTTTGAACTGTGACTTTGACAAGGTAACATATTATTCAGAAATAGAAACTACAGCATTTACACACATGTGTTTTGCCAAACACCGTTAGAGAGACCTTATGTGCAGTTTGTATATGTGTGCATCTCATGTGTCCTTTGGAAGCATCTCTGAGTTCCAAATGTCTCTTTGTATTAGAATTTTATTCTCAGTCATTTCTACTTGAAGAAATCACTAGACAAACAGTGATTTTACACTCATATACCATTAGATAGTTACTAATAAACAACTATTATGTCTCTATCTGATCAACAGAATTAAGGGCTAGTGAGATGACTCAGTGGCAAGCCTGGACATCTGAGTTATCCCTAGAACCCACATGCCTGCAGGAGAGAACTGAATCGCTCACATTGTCCCCTGAGCAGCCCCACAAGCATACACACAGAAAATAAATAGAGAAAAAAACCCAGTTATTCTGAGAATAATTTTGCAGTCAAATAGAAATTGATTCTTTTTTTGTTTTTGGTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGAAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCCCCGCCCGGCTAGAACTTGATTCTTAAGAAAACAATCGTTTTTGACATAATGTTAAAAATGAACACTGTTTTCACAAAATAACAAAAGTTTAATTTTTATGATCCAAGAACATTCATTATAGTATCGGCATTTAGAAACCTTACAGTTCTTGCTTTATCACTTTTTTTGATGCTTTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGTGTGTGTGTATTTCAGATTGGCCTCAGACTCAAAGTTCTACCTCCTGCCTCTGGAGTGCTGGGCTTATTGGCATGTGCCACCCTGTCCAGCTTTTAAAATATTTTTTAATCATTAACATTCGTGTAGAAACCATATTGTAGTCTTACTTTAAGATCACGTCTTTATTCCATGGAATGAATTAAACTTTTCATAGCAAAAGTTAACTCTGAATGCTGTCATCAAATATTCAAATAATGAGAAAAACCTACTTATTAGCATTTTCATTCCTAATATGTTAAAGAACATTAAGTGCTTAGATCTTAAGCATCAATTTACAAACTCCTGACCCAAATACAAAGCCCTCTGAAGTGTTTCAGGGTGTTTCCTTTTGTCATATTTGGAGTATTATTTCCAGGAAAATCCATCATTATCATGGAATTGATAGGCATTAGAATATGTGTCGATGTAGTAGATTAAAAAATATTTACCTAGTTTGATTATCTTAGGTTACCTCTTTAGTTTCTTGAAACTAAAATCAACCTCAGTCTATCTGTCTCTATTGAGTGTTGATATCCACATGTTCATTTAGTTGTCTTCTTACAGGGTCCTTTTTATTGGTAGAGGGAGTAGGTGACTGGAGTTAGGGTTAAACACAGTTTTATTTTCTTTAGGATGATGCTTAAGAGTATCATTCACAAAGACCAGTTGTCTCTTCGTCTCTCATTTTCTGCTATGTTTAATTAAGTGCAAAATATTAAAAAATAAAGCAGGAAAAAACAACAATAAACACTTCCAAGGTGACAGTGAAGGCCCTGTTTATTGTTAGTAAAGGAATGTCAGAGATTGGAATCTCTCATTATTTGAGATTTGATTGATAAATCCCAGATGAATGCTTGAGAAAGCCTCATGATTTTTTTTTTTAGTCGTAGGAACAACATTTGAGGTAGTGTAGTGCAAAGCTGCTCCTGTAGGCCATCATAAGGAAATGTGGGTCTAATGTGGGTCTCATCTCTGCTGATGGAAAATGTTACTGTGACCGGGCGACAGGGCAAATGAACATTCTAACTGACAAGCTTTTTATCTTTGGGTTTCACTCTTGTGTCCCCCACCCCTACCCCGTGTCCTAG
Seq C2 exon
GATTTTTGGGGGACTTATATTAGATATCAAAAGAAAGGCTCCATTCTTCTGGAGTGACTTCAGGGATGCTTTCAGCCTGCAGTGCTTAGCATCGTTCCTGTTTCTCTACTGTGCATGCATGTCTCCTGTCATCACATTTGGAGGACTGTTGGGAGAAGCAACTGAAGGTCGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026904:ENSMUST00000102735:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types