HsaEX0059783 @ hg38
Exon Skipping
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4 member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr2:161900911-161904178:+
Coord C1 exon
chr2:161900911-161901011
Coord A exon
chr2:161902028-161902164
Coord C2 exon
chr2:161904004-161904178
Length
137 bp
Sequences
Splice sites
3' ss Seq
TGCTTCCTAAATCCTCCCAGGTC
3' ss Score
7.35
5' ss Seq
TCTGTAATG
5' ss Score
-4.32
Exon sequences
Seq C1 exon
GAGAAGAGGAAGATTCCTGCTGTACCAAATGGAACAGCAGCTCATGGGGAAGCAGAGCCCCACGGAGGACATAGTGGACCTGAACTCCAGCGAACTGGAAG
Seq A exon
GTCACCAATATCCGGTATCTTCGCTTCTCCAGAGTTCTTCCACAGATTCTGTTGCTGACATGACTTGAAGTATCCATTACTCATCTGCTCTCCTGGAGTTGCTGGTGTACATCTGGGCTGCTCTTGCACTGTTCTCT
Seq C2 exon
GATTTTTGGGGGACTTATTTTAGATATCAAAAGAAAAGCTCCATACTTCTGGAGTGACTTCAGAGATGCTTTCAGCCTGCAGTGCTTAGCATCTTTTCTATTTCTCTACTGCGCGTGTATGTCTCCTGTCATCACGTTTGGAGGACTGCTGGGAGAAGCAACTGAAGGGCGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.886 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
A:
NO
C2:
PF0095516=HCO3_cotransp=FE(11.3=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGCAGCTCATGGGGAAG
R:
TACGCCCTTCAGTTGCTTCTC
Band lengths:
243-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development