BtaINT0136137 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004884 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr11:10365583-10370237:+
Coord C1 exon
chr11:10365583-10365638
Coord A exon
chr11:10365639-10370079
Coord C2 exon
chr11:10370080-10370237
Length
4441 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ATGTCCCCCTCACTGACCAGCGG
3' ss Score
6.7
Exon sequences
Seq C1 exon
GTCACGCCCAGAGCAGAAGCATGAACGATATTTCTCTCACCCCAAATACCGACCAG
Seq A exon
GTAGGAAACCACTGCCCTTGGCTGCAGCGGAGGGCCAGGGCGGGAAGAAGTCTTTGGTTTTAGGGGTGGGGAAACCTATGGGCAAAACTCTAGTCCCATGAAAAAGTGGGGTCCCCAGGAAGGACATAGGTGGGGCTCTGGGCAGCCATAGTGACTGACAATCCATCACTTGGGCTGTGCGCTAGGCCCTGGGGACAGAGAAATGTGATCAGATGAGATGTCAGCTGTCCTTGAACTGGGGATTTATTGAAGAGACTGCCACACAGAGTTTGCCTCCTCTGTGACCCATCCACAAGCACTTTGAATGATGAAGTGGGGACTTGGGTGGGTAGAGAAGCAGTAGGGCCTCCCTATGGAGACATTAATGATAGTGAATCAGCTGGACTGCGCAATGGTATATCTTCTCCTTGGCTGGTGCTGGATAAAGTCAATTCTTGTTTCTCACCAGCTTGGCTGAAAACTTGCTAAGGTCCGTTCAGTTCAGTTGCTCAGTTGTGTTGGACTCTTTGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCATCTCCCAGAGTTCACTCAAACTCACATCCATCGAGTCGGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCCTCATTCCTTCCAAGGAACACCCAGGGCTGATCTCCTTTAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAGAGCATCAATTCTTCAGCGCTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATGACCACTGGAAAAAACCATAGCCTTAACTAGATGAACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCGGTGATTTTGGAGCCCAAAAAGATAAAGTCTGACACTGTTTCCACTGTTTCCCCTTCCCATGAAGTGATGGGACTGGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCCCCTCTTTGACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCTGGAAATCTTGATTTCAGCTTGTGCTTCTTCCAGCCCAGCATTTCTCATGATGTACTCTGCTATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACGTACTCTTTTTCCTATTTGGAACCAGTCTGTTGTTCCACGTCCAGTTCTAACTGCTGCTTCCTGACCTGCATACAGGTTTCTCAAGAGGCAGGTCAGGTGGTCTGATATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACACAATCGAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAGCAGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCTGGAAGTTCATGGTTCACGTATTGATAAGGTCAGAAGCCCGCAAACAGCTCGGGAGCCCCATGACTATGCCCCTGAGGGAAGCACACAGGAGGCTGCCCTCAGTTCCAAACACGCACACCTCAGAGGCAGAAGGTCTCAAGGTCCCCTTGCCTCTGCCCCCAAAAGGTAGAAAGGAAGGTGAGAAAGGGCATCTGAAATTTGGTACCAACTTCTCAAGGGCTTGGGTGACTTCCAAGGGTTCAAGGCAGCCCCAAGTTTGGGAGTAGGCAAAACAAAAGCATTCCCTCAAGTCAGTGAAGTCAGTGTCTGGATGGCCTTTTGGTGGCCAAAATAGCAAAACAACAATAACAAAATCAACCAACATTTGAGGTCCACATATTGCATGCACTACACCGTGCGGGGCATTTCCTGTGCATCATGAGGGTACTGTGTCATCTTCCCTCTACAGATGAGAGCATAAAAGAGTTAAATAACATGCCCAAGTTCATGCAGCTGAAAGGTGGCGTGGCCATGATTTGATCCAGTCTGACTCTAGAGCCCTTAGTTTGGGACTGGCTTAGGAACGAGTACCCTGGAATATTATTTAGAGAAGAACCCCACTGTACTGTAGTCATGGGCAGACAGTTGAGCCGTGACAAGAAAGCACTGACTAGTGAAAGTTTTTCACAACGTATCTTTTTACTGCCTAAGTGGTGACAAGAATACTATCCACTACGTTCCCCAAGCAGAGCTGCCTTTTACTGAAGGACTGGAGCCCAACACCAGGCACCAGCATCCAGTTCTCCTAACCAGTTGTAGGATGCTGCTTCTCAGTGTTTGTAGCAGCAGTTGGCTTGTTGTGGGGACAGCAGTTTTGTACAACAGTGGGTTTCTTCAGGTGCATCTTTTTTTTACCACTCCACGTTGGCCCTGAGTTCCAGTGAGTTCCCAGTGGGCAGAGATGGATTCAAACAGTGTGGCCATGTGCAGTGACTTGGCAGAGCTGGACAAGAGTCCCCCGGGTTTAGGCAGTGGGGCCAGCAGGACCCTGGTTAGACAGGCCCACATCCAGACCATCACCCAGCCAGAACGCTCCCATGGTCCCTTGTTGGGGTACTACCACCCCGCCTCCTTACTGGGACCACAGGCCCGGATTTTGCTCCTCTCTGCTCCTGGTTACACGTGTGCTACATGGGCTATCCCAGAGCATTGTGGTTTCAAAACCTTGTTCTCCAGGACATGCCTACCACCGACCTCTCCTCCAGTCCCCTAGAGCTTCTCCCTGCCTGGAGCCCGAGTACATAGAGTTGGCAGGGGCACGGTGGCTGCCCTGGCATGCTCAGCCCTCCATCCTGAAGAACCTGCTTATGAATCAGCTGACAGAGCTTGGGACAAAGGGACCTTTTGAGTCCTGGGGATTCTGGCCTTCCCATTAACACCTGCTGTTGCTTCTTCTTACTACATTAGGGTCCTTCGTGTTGTTGCCTGGGTGGTTATGACAGTTTTACGTTTCTGAGTGGTTTTAAGAGATTATAAGGGTGTAGCCCTTACTCACAGAGCCTCATCGAGTGCTGGTAGGGCCCCAGCCCAGTCTGTATCACGCATTCCATGAGTCAAATCAGGAAATGGCTGTGAGCCCAAAGGGGCAAGACCTGTTGGCCATGCCCATGCCTACAGCTGACCCCTCTTCAGGGACAGAGGAACTTATCTTCACTAAGCTTCTGTGCTCACAGGAGAGACTCCCATCAGGTGAGGAGTGGGTAGCAAAACTGAGGCACCCAAGGATCTCTCTGAAGCACCAGCCTGCTCCTCCTGGGCCCTTTCTTCCTTTGTCAGCTACTGTGGCCTCCCACGAGCCCTGTGCTACCCAAACGCCCCTCCCCACCTCTTTCTCTGAAACTGTCTCTGTCCCTCGCCCACCCCTTGCTACCTAGAGGGAAAGTGATCTGAAGAACTAATGCACCCTAAGATGTTCAAGATGAACAAGAGCATGTACGTGACCACCCCTGGGCGTTTTCTTTGTCTGAGGGGACTCGGGAGGAATAAATGTCTTATTCATAGAATGGAAGTCATAACCACAGAGAGTGGGCAGGGGGTTGTCTCCAGCACCTTTCACATCAGACCCCACTCACTCTGCCTATTTGACCTTTCTGCCCTGAACAGACACCAGCCAGAGGGACTGGCTGGAGGGCACTTCAATAGTCTCAGCTGGAAAAGTTCAGAAGCTATGAGTTTCCTTGGAGGTTCCCTGGGGGTGACTTGGGGGCACCGAAGTCTCCCATAGACTTGGATCCACAGGTACAGGGATTCCCATCAGCCAGAATGCTGGGTGGCAGAGAGAAAACAAAGTCCGTCCACTCTGCCCATCAGGATGGTCTTGTTCCTCCCATAGCCACTAGGGTGAAGGCAAAGACGGAGGGCTGGGCAATGGAGTGTATGAGCCAAGACCCCCATCGGCTTGAGCTGCAGCTGGGGGATGAGACTCGCTGTCCAGCAAGCCTGGCTCTCTTCTCTGACCCCTCAGCTCATACTTCAGTAGAACAAGGAATGTCTTGGGGGGGTCAAGTCATTGCCTGCTCCTTCCCGTCTATGAAAGGCTTAGTTGGTCCCTGGGGTTAACCAACTTTGAGTCTCCTCATCTGCAGGCTGCAGGAGAGTGTTAGGCTATTTCCTTCAGTCTCTAGAGAAACACTGGGAGAATTTTGTAAGGTTAGGCCTTCAGAGTAATCTGAATGAGCTGAGTAAGAGCCAAAACCACTGCATATGAGTACCCATGAGTATCTCATGTCCCCCTCACTGACCAG
Seq C2 exon
CGGAAAAACAAATTCATGAAGAAGATCCCCAAGGACTCAGAAGCCTCCAACGTGCTTGTGGGCGAGGTGGACTTCCTGGACCAGCCGTTCATCGCTTTCGTACGTCTCATCCAGTCAGCTATGCTGGGAGGGGTGACCGAGGTGCCTGTGCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004884:ENSBTAT00000006425:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(6.7=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(19.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development