HsaINT0153464 @ hg38
Intron Retention
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4 member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr2:74255775-74259643:-
Coord C1 exon
chr2:74259588-74259643
Coord A exon
chr2:74255933-74259587
Coord C2 exon
chr2:74255775-74255932
Length
3655 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
3' ss Seq
CGTTTCCCCTCCCTGTCCAGCGG
3' ss Score
9.68
Exon sequences
Seq C1 exon
GTCATGCCCAGAGCAGAAGCATGAATGACATTTCTCTCACCCCAAACACAGACCAG
Seq A exon
GTAGTAAAACCCCTGCACTTAGCTGCAATGGAGGGCCAGGGCAGGAAAAAGTCTTTGGTTTCAGGAGCAGGGATCCCCTATGGGCAGAGTTCCACTCCTACAAAGGAGTGGGAGTTCCAGGAAGATCCCCAGTGGGGACTCTGGGCTGCCTGGGGGACTTTGCCAAGGCCAGTAGTCGGGGAATGACGGAGTCCCAGGTGCTGGCTCTGTGTCAGGCCCTGGGGGTGTGGGACAGAGAACATGATTAAATGAGGCGCCAGCTGTCCTTGAGCTTGGGATTTGTTGGAGAGAGAAGACCAGCACACATGGCTTCATCTATCCTGTGATCCACAAGCACCTTTAAAGATGGGATAGGGACTGGGGCTGGCAGAGAGACAGAAAAGAATCTCCCTGTGGCGAGAACAGTGGTAGTTAATTAGACTGTCCAATAGTGCATCTTCTTCCTGTGGTCTCCCATGAACTGGGCTGAAACCCTCGTGATGAGATCAGAATTCTGCAAACAAATTGGGTCCAGTTCTAAGGCCCACAGCCCCAGAATCCTGTGACTGTGCCCCTTGGGGAAGCCCAGAGGAGGCCCCCTTAATTCCAACTCCTGCATACCTCAAGGACAGGAGGCCCCATGGTCCCCTTGTCTATCTCCCCAGGAGTAGGAAGAAAGATGACAAAGGAAACCTGAGACTTGGCGAGGAGCCTTCAGGAGCTTGGGTGACCTCCAGGCCTTCCAGCCACCCCTAAGTTTGGTGGAAGGCAAAAACAAAGTCAGCCCCTCATGTCAGTGTCCCGGGCACAAATAAATTAATAACAACAGTAACAAAATCAATCAATATTTAAGCTCCACACCACATGCACTACACTGTGCCAGGCATTTTCTGTGAATCACAAAGGCACTATTTTCATTCCCATTTTACTCATGAGAGAACACTGAGGCTTACAGCAGTTAAATAACACACCAAAGTCTATACAGCTGAAAGACAGAACTTTGATTTGACCTAGGCAGTCTAACTCCAGAGCCCTTAACTTGGAAGTAATTTAGGAACTAGTCAGTATTCTGGAACATTATTTGGAGAGGAAAACCACTTTTACTCATGCATACAGACAGTGCAACTGTGATAAGAAAGCATTACCTAGTAAAAGTTTTTTATAACCTGTTTTAATGAATGTGTGAGTGGTAATAATAACACTAGCTGTCCCTTTCACCAGACAGTGCTTTCTTGATTTGGGGATTGGAACCCATCACCTAGCGCCAGCATCTGGTTCTCCTTGCTGATACTTGATGCTGCTTCTCGGTATTTGCAGCATCAGTGGTCTCTGCTATTGGGTGCTCTTCAGGTGCAAGCCCAGAGGCATTTGCTCTGCAGGCTCTTTCTTCATCATTGATTTGTGCAAAGCTAAACTCCATGCCTGCCCTCAGCTGGCAGATTCCCAGTGAACAGAGAGTAGATTCAGACAGCATCGTTGTGCTGCAGTGACTCTGCAGTGCAGAGCCAGATTGGAGTCCCCAAGGGTTCAGGAAGTGGAGTCAGCAGGGCCCTGGTTATACAAGCCCACATCCAGGCTTTGGGCAAGCCAGGGTTGGTTGGAACACTAGCATGCTCCCATTTCTGGGATGCCACAACCCTGGCCTTCTTACCAAACATGTCACAACGTGTAAGGAAGGACCAACTCCCTGGTTAAATTTCTCTTATCTTCTGTATTACAAGTGGGTTGGTTGGATGGCCAGGTGTGGTGGCACACACCTGTAATTCCAGCAGTTTGGGAGGCTGAGGCTGATGGATTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAACATGGAGAAACCCTATCTCGATCAAAAATACAAAAATTAGCCGGGCGTGGTGGCACATGCCTGTAGTCCCAGGCATGTGCCAGACAGGCACGAGAACTGCTTGAACCCAGGAGGAGGAGGTTGCAGTGAGCCAAGATGGTGCCACTGCACTCCAGCCTTTACGACAGAGTGAGACTCTTGTCTCAAAACAAATCAAAACAACAACAAAAACAAGTGGGTTTGTTGGGACACCCTGAAGCATTGCTGCTTCCGAAGCCTCTTTCTCCAGGGTGCTCCTGCCCAGCCCGTATCTCCTCCCCTTCCCTGGACCCCCTCCCTGCCTGATGCTCGGAGACGGTGGCTGCCCTGTTACACCCAGCCCTCCACCCTGAAGAACGCTGCTTAGTAATCAGCTGACCATGCCTGAGACAAAGGGACTTTTTGAGTCTTGGGGACTCCGGTGTTCCTGTCAATTCCTGCTTTTTCTCACTATGTTAGGATCCTTGGGGCTGCTGATGGTTGCCCAGGTGGTTGTGGAGGGTTATTTTTTTTTTGTCTGATTGGATTTAAACGATTATAAGGGTAGTGCCATTGCTCACGAGCCCCTCCTCGTGCTGGTAGGCCACCCAGCCCAGTGTGTATGATGCCCCCACATGAGTCGAATTGGGAAACAGCTGTGGGGACAAAATGGCAGGACCTGTTGACCATATCCATGCCCATAGCTGACCCCTCCACAGGGACAGGAAGAGGCACAAGGAAGCTGTGTCTTCACTGAGGCTGTGAGAAACAGGCCTGTGCCCGCGGGAAAGACTGCAGTAGAAGGGGGATTGGTAGGAAAATTGTGATGTTCACAGGCGCTCTCTTCAGAGCTGTCCTCTACCCCCAGGCGCTTTCCCACTGTGTCAGCGACTGTGGACTGCACCCAGTCCTGCCGCTACCCCAACTGCTCCCCTCCATCTTCCGACAAAATTATCTCTGTCTCTTGTCTGTCCATGCCCTTGCTGCCCAGAGGGAAAGCAATCTGAAAAAGGAATTCATTCTAAGACGTTAAGGACTAAGAAGAGCTTGAAAGTAACCATCCCTGGGGTATCTTCAGCATAAAAGAGGACTCAGGAAGTTATAAACGCAGAGAGTGGGAATACATTTGGGTGGAGGGCTTGTCTCCAGTACCTCTCACATCAGACCCCACTGGCTCTGCCTGTGTGACCTTCCTCCCATGAAGTGACACTAGCCAGAGAGACTGGAGAGAGGCCACCTTGATAGTCTCTGCTGGAAAATTCCAGAAGTGATGAATTTCCTTGGGAGGTCCCCTGGGGGTAATGTGGGGGCATGGAAGTCTCCCACAGACTTGGAGACTGGTCCAGGAATTCCTGTGAGCCAGGAAGCTGGTGGCAAAGGGAAAATAAGGCCTGTTTACTCTGACCATCAGAACAGGCCTCCTCCTCCCCACAGCTACCAAAAGTGAAGGTGGAGAGGGGAGGTCTGGGTGGCTGAGGTAGAAGCACTGAGACTCCCATCTGCTCAGCCTGAAGGAGGCCATCCAGGCCTGATGTCCGGCAACCCCGGGGCTCTTCTCTGACCCCTCAACCCACATCTCAGTGGAGCCGTTTTCATCCGTCAAGGAATGTCTTAGTCAAGGAAAGTCGTTGCCAGTTCCTTCCCATCTACAAGGCTTAATGGTGCCTGGGGTTAACCTACATTCAGTCTCCCCATCTGCAGAATCGGAGGAGTACTTATTTATTCTTTCAGTCTCTTGGCAACATTGGGAGAATTTTTTTCAAGTTAGGCCTCAAAGCAGTCTGAAGGGGAGTGAGGGAGTGAGAGCAGGTGGGAGTCTCCTTGGCTATCTCGTTTCCCCTCCCTGTCCAG
Seq C2 exon
CGGAAAAACAAATTCATGAAGAAGATCCCCAAGGACTCAGAAGCGTCCAACGTGCTCGTGGGCGAGGTGGACTTCCTAGACCAGCCATTCATCGCGTTCGTGCGCCTCATCCAGTCGGCCATGCTGGGAGGAGTGACCGAGGTGCCTGTCCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687:ENST00000377634:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(6.7=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains