BtaINT0137046 @ bosTau6
Intron Retention
Gene
ENSBTAG00000043991 | SLIT1
Description
slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11085]
Coordinates
chr26:18139629-18140407:-
Coord C1 exon
chr26:18140277-18140407
Coord A exon
chr26:18139784-18140276
Coord C2 exon
chr26:18139629-18139783
Length
493 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
GACACCTCGTCTTCTTCCAGCAC
3' ss Score
7.77
Exon sequences
Seq C1 exon
GTCTCCACGGCAGAAGACAATGGAATCCTGCTGTACAATGGGGACAACGACCACATTGCGGTGGAGCTCTACCAGGGCCACGTGCGTGTCAGTTATGACCCGGGCAGCTACCCCAGCTCCGCCATCTACAG
Seq A exon
GTAGTGCTTCCTCCTGCCCACCAGCTGCCCTCAAGGGCTGGGGAGGCGGGGGTGTTGCTGCCACAGAGAGGTGTTGTGGGCCAAGAGCAGGTGCTTATCAGGATCCCCAGAGATATGGGCTGCTCAAGTGGAAATGGCATTCAAACCACTGGGTCCAGTCCCACACTGGGTGTGAGGATCTGGGGCCTGAGCTGTGGTCCCAAGCTTCCCCATCTCACCACCACCTCACCGGGGGCTCCATAGTGGGGAGGGAAGGGTGATTAATTGGAAACCCCTGCCCCAAACTCCTCATCTTAATCGCAAGAGAGTCCCCCGAAGGGGAACATGAGGGACCAGGTCAAAGGCCACTGAGTTTCCACAGTCCTTTCTCTCAGAGATTTGGTTTCTTGGGAAGCAGGTGCTGGACCAGTGGCCTTTCTAGGGAAGTGACTGGGGAGGGACGGGTCAAACTGAAGGCCATTCCGTTGGGTGGGGACACCTCGTCTTCTTCCAG
Seq C2 exon
CACTGAGACGATCAACGATGGGCAGTTCCACACAGTTGAGCTGGTCACCTTTGACCAGATGGTTAATCTCTCCATCGATGGCGGCAGCCCCATGACCATGGACAACTTCGGCAAACACTACACCCTGAACAGCGACGCCCCCCTCTATGTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043991:ENSBTAT00000061296:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PU(33.3=97.7)
A:
NA
C2:
PF0221019=Laminin_G_2=FE(40.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCACGGCAGAAGACAAT
R:
GGCGTCGCTGTTCAGGGT
Band lengths:
270-763
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]