BtaINT0137091 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005108 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr6:41509513-41510484:+
Coord C1 exon
chr6:41509513-41509676
Coord A exon
chr6:41509677-41510447
Coord C2 exon
chr6:41510448-41510484
Length
771 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
TTGCATAAGGGCCTTCCCAGGTG
3' ss Score
-0.07
Exon sequences
Seq C1 exon
TCGACTCCATTCGAACAACCTATATTGTGACTGCCACCTGGCCTGGCTCTCGGACTGGCTGCGCCAAAGGCCTCGGGTGGGCCTCTACACTCAGTGTATGGGGCCATCTCACCTGAGGGGCCACAATGTAGCTGAGGTTCAAAAACGAGAATTTGTCTGCAGCG
Seq A exon
GTAAGAGAGAAAGAACCTTTCTGTTTTCATATTCCCGTATGCTATGATGTAAGGAACTGTGCAGGGTGCATGCTTGAAAGGTTTCACTGTTCCTCACTAACCTTTGCAGTTGTACACTAATCACTCCATGGAATTCCTCTGTGTTTGTGATGATGGTCATAGGCTGTAAGACAGTCCTGCATGGTTGGCAGTTACTGATGATTTGTACCTAAGTTGTGATGAAGGATTTTTAAGTTTTCACTCCAAGAGAAGTGTAAGAACTTTTGAGATTATAGTTCTGTTTGCTACTCATGATTTTCCCTTTAAGAAAGATCATTCTTACTTTGATCTTAACAATTGGAAAAATGATGAACAAGAATTGGATCCTGGCTAGGAAACTGAAAAAGTAATAGAACTGTAGTTGAAAAGTGATAAAATACTTTTCATGTATATGTATGTACTAGTCATTAAGTTCTACCTAAAAGAGATCAATGACTGGCTTCAGTAACAAAAATATAAAAACAAAAATAAGACTTAGGTTATGTAAAGTATGAATAGGTGACTTTCAGTTCTTTCTATGTGTTTAAGTATTTCATGTATATTTACCTCCCTCATAACATCTGTAGAGAAATGTAATATTATCTTTATATTAGAGATTTAAATGCTAAGAAAAAGAGATGATAAGTAACCTTGTGCAAGGTTATAGAGTTGAGCTCAAGGACCTCAAACTGCACAGTCTGATTCCCAGTTCATATAATTATATGTTAATATGTTGCATAAGGGCCTTCCCAG
Seq C2 exon
GTGGCACTAGTGGTAAAGAACCTGCCTGCCAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005108:ENSBTAT00000061059:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=44.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACTCCATTCGAACAACCT
R:
GCATTGGCAGGCAGGTTCTTT
Band lengths:
199-970
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]