GgaINT0077282 @ galGal4
Intron Retention
Gene
ENSGALG00000014419 | SLIT2
Description
slit homolog 2 protein precursor [Source:RefSeq peptide;Acc:NP_001254004]
Coordinates
chr4:74639447-74641944:-
Coord C1 exon
chr4:74641781-74641944
Coord A exon
chr4:74639586-74641780
Coord C2 exon
chr4:74639447-74639585
Length
2195 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
TGAAGTCTTTCCTTTTGCAGGTC
3' ss Score
10.72
Exon sequences
Seq C1 exon
TCGCCTGCACTCCAACAACCTCTACTGTGACTGCCACCTGGCCTGGCTGTCGGACTGGCTGCGGCAGCGGCCACGTGTAGGCCTCTACACTCAGTGCATGGGCCCAGCACACCTGCGGGGCCATAACGTGGCTGAGGTCCAGAAGCGGGAGTTCGTCTGCAGTG
Seq A exon
GTAAGGGCAGCGCTTTGCCACCTAATCCTCACACGTTGATAACATTTGCATGACTTTTTTTTTTTTTAATTACTATTATTTTAATGAAGCTAATCATTTTTATCAGTAATTTTTATCTTCTGTGGTGCTGCTTCTGTCGTTACAAATTTTTTGTGAATGTGGCATAGAATATATAGCCTTCATAACTATGAATGATGGGGAAGAGAGATGAAAAGGTGCACCAATTGAGAACATGAGGGATTTCATAATAAGGATTTGGGTTGTTGATTTTTTTTTTTAAGCTCTACAGGTTGTTATTTTTCCTTTTTTGTTATGTTTCTGTTTCTTTTCTGTTTCAGTTTAAATAGTATTTTCAAATTCCAAATAAACTTTTGAATGATATTGCTATGCTTTAATGCATCAGGTTGCTTTCTGATATGAAATGATGAAATGGCTAACAGTTCATTACTAATCACATTCTGTCTGTTTGATATTTTCCTATATTCTTGTCTCCAAGATGAGGAAGAAGGCAAGTTTATCTTTATATCTCTAACTACTGTTTAAGCTTCCTCAAAGTATTGAAAACATCTGGAAAATAATGTCAGTCTTTCTGTTCAGCAAAGGTGTTTTTGCTGGTTGTTTTCCTGTGCATGCCCAGATGTCCATTGCTATTATGCCAAAATTTACAAAGATCTGTTTTCTGAATACAGTTTTTTCTGCACAGCAAAATCTTTTGTCATTACTGAGCAGCTTCTGACATTGCAGTTAAGGTGCTGTCACCCTAGCAAGGCAGGTGTTAGCCATACTCTAACTATTACTTCTGTATTTATGTATTCACAAAAGGTCTCCTAGCAAGAACACATCGTGTATCTTATTTGTAAATTGTATAGTTTTATAACTTGGTCATTATAATGCTGATTTTGAGGAGGGAGTATAGCCATGTTTTATCCCTGGATCACTCAATTTTTGTTTAATAAATGTAGGTGAAGTATTTTCTCTTTGTTAGTACAAAAAGGAATAATATGGATTTATTAGTTTTGGCAGTTGTATGTGCTTTTGTAACACATACCTTAATATGAAATCAAGTTATTATATTGCAAGCTACTATCTCACAGGACTAACTTTTCAGTGAAGTAATTTTAATATTTGAGTTGTTATTTGAAGTTGTAGCTACGAATAGCGCTGGCTGAAACTTCACAGTGATCTTACTTACATTATCAGTGGACCCTTTCTATCTTAATATATGGCATTAAATCTAGTGAGGGAAATCTGAGACAAAATTGTGGTTTCATAGTTCAGAAATCTTTTTGTTTCATGGGAATTTAAAAACAGTCCCTAGCTTTTTTACCTTAATAAAAAAGAAAGGAAAAAGAAAGTCTTCATTCCTTCCTCATGTTTTTGTGCCTTTTCTATCATTACAAAACAATAATAAAGTATCATTAAATCAATGGAATAATGAGTGTTTTACGTATTATTATAATATGTGTAATCTGCTTATTTGCAGGACAATGTAATAAGATATTCCTGTTTATTTTCTATAACTTATTCAAACTAAAAGCTATTAAGCTTAAATGTAATTACGAATATTGAGTTTAACATAAAACAGAAGAGCTTGGAAAAAGACATAATCATGCAAATTAGCCACCTGAGTAGTCAGAAAGAGTGCTAACTTAAGGGAATGAGAAGTCCACTGAAGTAACATAGAAAGTGAGAGTAGGAGCTGTGAAGTCAATGCTTTTATGTATCAATGTGTATTTGGATGAAAAGGCCAAAATATTCTGTAACTGATACATACAGTGACGAACAACGCTAATGAGTATTTGCAGAACAGAACATAACTATCAGAAGAACACTGTGTCAAAATTCATTACTGTCAATGTTCATTTATGATACACAAAACTTTAAAAACTAGACAAATCAATACTTGGTTTTTAAAACCACAAAATAAATAAAATACACACAAAAAATGGACTGCATTCAGTTTTCTTTAACAGATAATTTTGCATATGAGTTGCTGAAGAAATTGAGAATTTACGAAGAATCTAGAACAGTAGTCTCACTGTGTCACCATGTTGCTATTAATTAGGTATTTAAATTAATGTAATTTGAAAGTATTGATGGGCAAGAATGTTTTTCAGCGAAGCATAAAACATGATATTTTACTCCTGAGGACTACTGTTCTGTACAGTTTTAGAATGAAGTCTTTCCTTTTGCAG
Seq C2 exon
GTCACCAATCATTTATGGCTCCATCCTGCAGTGTCTTGCATTGTCCTGCTGCATGCACCTGTAGTAACAACATTGTGGACTGTCGTGGGAAAGGCCTTACTGAAATTCCAACAAATCTTCCAGAAACCATTACTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419:ENSGALT00000037322:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=44.6)
A:
NA
C2:
PF0146213=LRRNT=WD(100=59.6),PF138551=LRR_8=PU(8.2=10.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]