BtaINT0139165 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32735701-32739436:+
Coord C1 exon
chr15:32735701-32735885
Coord A exon
chr15:32735886-32739316
Coord C2 exon
chr15:32739317-32739436
Length
3431 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CTGATCTCTCCTTTTACCAGGTT
3' ss Score
10.06
Exon sequences
Seq C1 exon
TTGGCAACCTGACAGCTCATACGCCCTACGAGATTTCTGCCTGGGCCAAGACCGACCTGGGGGACAGTCCTCTGGCATTCAAGCGTGTCACAACCAGAGGTGTCCGCCCCCCCGCTCCGAGCCTCAAAGCCAAGGCCATCAATCAGACGGCAGTGGAATGCACCTGGACCGGCCCCAGGAATGTG
Seq A exon
GTAAGTCAGCCCGGATGACCTCTGCAGAGTGAGGATGGACCCTCGCCTGGCGCTAGACCACCGGCCGCCCCCAGGGCTTCCCCGGCCGCTGCTTTGTTTCCTTATCCCAAACACATGCTACCCTCTTGGTCAGCTCTGGATTGCCTCCCAGAGGCACCTGACATCCCTTTCTACAACCTGGCCTGGCATCTAAGAAGAAAGAACCCCTGTTTAAGCCGAGTATGAAGAGGGGTCACATTCCTGATCAGGCACTGCAGCGGGGGTGGGTCTTACCTGGGGATGGGTGAGAAGTCAGTTGCCTTGACAATGATTATCGCACCTGAGGACCATGCCGGGGTTCCTCTCGCCCCTCCCCACCTGGGGGATCCCCCACTCACAGGTTGCCTTCTCAGGCACCCCGCCCCCCCCCAGACATGCCTCCCTATTCATTCCAGGGCCCCCACTGCACTTGTACGTGGGTCTTTTTGTTTCTTTTATTTATTCATTTTAACGCATCTGATGCACTGGGATTAGATCCGTGCTTCTTTTTGAGTCTGGTTTTGCCTTCCCACCCTCCCCAGCGCGCACCTTCCTTTGCTTTTAGGCACACCTTCCCAGGGCTGTTTTCACCCGCCTCCTGCCTCTGCCCCATGGCTTCTGCTCTGTCTTGCCTGGAACCCTTCCCCCACCTGCTGTGCAGTCAACTCCTAGCTCTTCTACTCGGTCTCCTTCCCTTAAGAACTGAATCCTTAGAGTTGGTGCCATGCAGCCTGTTTCATCAGACCCTGCGAATCTGATTTGATATCTTCTGTCTACTCTCATCTCCCTAACTAGTTGATAAGATCTTGAAGGGAAGGGTCATTTTCTGAGTTTTCCAAATGGAAAAGTGTGTGGGACTAAATCTGTAAGAATCCTCAGTGGCTGGTGAGGAGGAATTGGCCTCTGTCTTCTGAGGGCGTATCCATTGTGCAATGCGGGCAGCACTGGTTCATGGGGAAAGAACCAAGGTTTGCCAGGAATTGTCTGTGAGCTCAGCCATGAAGAAGGAAGGGGAGGTGAGAGTTGTTGAGCACCTACCGTGTGCCAGGCACGATGCCCACCCTCCACCCGCGATCTCCTACTTCCTACTTTTATCAGCTCTGTGGGGTAAATGTTTCTGCTCTACCAGTGAGGAGACCACGGCTCGGAGGGGTGAGGTCACTGGCCACAGTCAAGGGTTAGTAAGCAGCAGACTGAGTTAGAGCTCAGGTCCGGCTGGAGTAACAGTCTGGGCGCTTCTGTCGCTCTTGAACCTCACTCTGAGGCAGGGACTGGGATGAGATGCCCAGAGCCAGGCTCAGGGCTCCGTTTTACCTGGAACCGGACTCTCCTCAGAGAGGGGCCTCTTTGGTTTATGTGCCCAACTCAGGCCTGCCTACCTGTCACACCCAGCCATCTGCACAGTGGGGTGTTGTGTATAGAGCACCGGTCTGCGACTTGATTTTGGTATCTTATCACATGTGAACTTGGAGAAGGAGCCTCCTCCATGTTGAGAGTCTGCTTGCACTCATGGTAGCCTTCTGAGGGTCAGGGGCCCATGGAGTGCCCTGAATGAAGCCCTCAGCTCCCACGTGTCTCCAGCTCACTGTGGATGCTGGAGTCTCACCCAGAGTTGTTGTCTCCCCGACAAGAGCTGTTCCCATCACTGTCAAGTGTGGCCTTCTTACACCCTGGCTCCCTGGGCTCTGGGGTCCCCTTTCCTGGCCCTTGGCTGGAGCCCCCATCACGTGGTGGCCCCAGGCGCATCCTCTCCAGGGTCAGACCTTCCTGCACCCTGAGTCCCCCTCTGCTGTCCCATCTGAGCTTGCTCATTCCCCTATTCCTGCTCCATTCCTATTTGTTTATTTGGGAATGAGAATCCCTGATGGGTTTCCGGCACCCCTGGGGCTTCTCCAGACCTATACGGTTTTCAAGTCCCCTGTCTTGCCTGCTTATATGCTCGTGGAGGAAATGCCCTCTGTCTCTACCTTACAAAGAAAGCTTCCTTACACTTACCCTGTTATAAACACTTGCAGCCTTCACTTTTCCCACTACAAGGGCCATCAGACTCCCACCTCCTGCTTTAAACTCCATGTATATCACTTAGGGTTAATAATGGCTGCATAGAACAGGAGTGGCTTTCAACAGTTTATTTCCCTCCTAATTATGAGTTGTTCAGAGTTTGGAATTCAGCCATCTAGGGCTTCTATATCAGCAGCATGGTTTGACCCATTTCCCATGCTCTACTAATAAAGGTCTGTATAGTCAAAGCTGTGGTTTTTCTTATATGGATGTGAGAGTTGGACCAGAAAGAAGGCTGAGCACTGAAGAATTGATGCTTTCAAACTTTGGTGCCAGAGAAGACTCTTGAGAGTCCTTTGGACAGCAAGGAGATGAAACCAGTCGATCCTAAAGGAAATTAACCCTGAATATTCCTTAGAAGGACTGATGCTGAAGCTCCAATACTTTGGCCACCTGATGCAAAGAGCTGACTCATTGGAAAAGATTGAGAGGAAGATTGAGGGCAAAAGAAGAAGGGGGGCGACAGAGAATGAGATGGTTGGGTGGCATCACTGACTCAATGGACATGAGTTTGAGCAAACTCCAGGAGGTGGTGAAGGACAGGGAAGCCTGGCGTGCTGCAGCCCATGGGGTTGCAAAAGTTGAACACAACTTAATGACTGAACGACAACAACAGCCAGTCCCCTGCCAGCCTTGCCTGTGGCACCACCTTGCAGCCTAGGGCTTGGACTGGACCCCATCGCCTTGTGTACTCCGTGCAGCGGGAGGGGGAAGACGTGCTCTCCCTGCATTTCCCTGAGCCCCCACTGAGGTCCCGCTTAGGGTGTCTGCTGGCATCTTGGTGAGCATCCCTGTCACTTGGCCTCTCCTGCCTGGAGGAGGGAGGTGGGATGCAGGCTTGTTTCCAGGTAGCAACTCTCACTAAGAACCAGGATTCTACTGCGGGAGGAGGGGAAGACAGGGACCTGCTGGGCAGCCGGCAGTGTCCCCCCTCCCGCCACACGCTATCTCGACCAGCTTGCACACTTGCTATCCCCATCGCACTAGAAGAGTGTCCCCACTTTTGGTCATTCCCTCTTTTCCCCAGCTTATCGTGCAGTCTTCTAGTATAGCTTCCAGGAGTTTCGTATTTACAACTTGTTATTTATAAATCTGTTTTTCTTCTTTGCCTGGCTTTACTCAAGAAAGCGAGCTCTGAGGACAGAGACCACATCTTATTTATCTTCGTAGGTGGGAAGCCACTGCCTGGCCCAGGGTGCCTTCTCTGTAAACGCTGATGAAATAGATGCCGAGTGAAGACTTCTTTGTGCGCTCATGTGGAGTGGTTCCCAGGGTCTTAAATCAGGGCTTTCATGGGAGTGAGGTCACCGGCCGTTGAACTGGTGCCCTTTTCTGATCTCTCCTTTTACCAG
Seq C2 exon
GTTTACGGTATCTTCTATGCCACGTCCTTTCTTGACCTCTATCGCAATCCCAAGAGCTTGACTACTTCGCAGCACAACAGAACAGTCCTTGTCAGTGGAGATGAGCAATATTTGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611:ENSBTAT00000019457:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development