GgaINT0138776 @ galGal3
Intron Retention
Gene
ENSGALG00000006598 | SORL1
Description
NA
Coordinates
chr24:3533376-3534161:-
Coord C1 exon
chr24:3533977-3534161
Coord A exon
chr24:3533496-3533976
Coord C2 exon
chr24:3533376-3533495
Length
481 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGG
5' ss Score
4.34
3' ss Seq
TCTTGTCCTCTCCTCTGCAGGTC
3' ss Score
12.62
Exon sequences
Seq C1 exon
TGGGCAACCTGACAGCTCACACCCCCTATGAAATCTCTGCCTGGGCTAAGACAGAGCTGGGTGACAGCCCTCTGTCTTTTGTGCACGTTGTGACCAGCGGGACGAGACCCATCCCACCAAGTCTCAAGGCCAGGGCCACCAACCAGACAGCAGTGGAGTGCACCTGGACCGGACCGAGGGATGTT
Seq A exon
GTAAGGCCCTGAGGCTCTCCTTTCTCACTTACTGGGATGGGGTCTGGCTCAGAGCTCAGAAACACAAGACAGTTTGGAACAGGATTGTTTGTTGGGACTGAGTTCCAAAACCCTGAAAAATTTATGTTAAAAAAAAATGTAAGGAGGAGCGCTTGCTGCCACGTCCCTACCAGCACAGAAAGGCTTTTTGTTGTCTGTTGGTTCAGCTGCTGTTTCACAGAGGAGGGGCTGAAATACAGATAACATCATGATGCTCCCGTGGCCTTCTAACTGATGGCTGTGTTGTCAGGGGTGGGAGCAGGTTCCTCAATGAGGACCTTAATCAAAGGAGAGGGCTGCTGGGCAATTTGGTTGACAGACCAGAGCTAAACTTGGGCCCAGGAGGACCATATCCCTAAAGAGCAGCAGCACACCAAGGTTTGGGTGGGAGCTCCATGCCATGACAAGCTTTGCACCATCCCTCTTGTCCTCTCCTCTGCAG
Seq C2 exon
GTCTATGGCATCTTCTACGCCACGTCCTTCCTTGAGCTCTACCAGAGCCCTCACAGCACCACCACAACCTTCCACAATGCCACTGTCATCGTGCAGCGGGACGAGCAGTACCTGTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598:ENSGALT00000010639:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTGACAGCTCACACCC
R:
AGGTACTGCTCGTCCCGC
Band lengths:
294-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]