DreINT0154473 @ danRer10
Intron Retention
Gene
ENSDARG00000013892 | sorl1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
Coordinates
chr15:21613062-21616343:-
Coord C1 exon
chr15:21616159-21616343
Coord A exon
chr15:21613182-21616158
Coord C2 exon
chr15:21613062-21613181
Length
2977 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
3' ss Seq
ATGTTTTTATTTTTCCACAGATG
3' ss Score
12.16
Exon sequences
Seq C1 exon
TCTCTAACCTGACAGCAGGGACGGAGTATGAGGTGGCGGTGTGGGCTCACACTGATGATGGAGACAGTCCTACAGCCCTGTCCCGCCAGCAGACTAAAGGCAGCAGACCTGTCCAACCCTCACTAAAGGCCAGAGCCCTCAACCAGACTGCTGTAGACTGCAACTGGACTGGCCCGCCAGCAGAG
Seq A exon
GTTAGACTGTCTCCATCTAGTCATGATTTCAGTAATCCTATCACTAGTGTTTATATGGATACCTCACTGTTTCTATCTGGTGTTAGCATGAGTATGATAATGTCTCTTGTGATCATTTGTATTTTGATCTCTTCAAGGCACATACACTTTTATTTTGTCCTGCTTTACATCAATTTCAGCTCCTAATGTGATCCACATTTACTATTGAATGAATGAATGAACGAATGAATGAATAAATGAAGCATTTTATTCACAAACATTTAAAGAAATGCTGTCATTTCAGTATGAGTTTCAGTGTTTGGGAAATTCATAAAAATAAGGTGAAAATATTGCTTTGTTTTGGTTTTTGGGAACACAACAACACCCATTGAGTTTTTTTATGAAAATATAGGCTGCCAGTAGTTCTTAATAAAACCAAATGTTTACAAACAAACCTATTTTCCCTTCTCTCTACAATAAATCATTTATACATTGGGCAGTATTCAGTTTTACAGTTAAAGAGCCCCTATTTTGCATTATAAAAGGTCATATTTTGTTTTTTGGGCTCACCAACAGCTGGCTGATATGTGTGCAGGGTCAAAAAAACACTTTCATTATCTTTTAATATGTATTTATTTATTTTTACCAAATTATCCCATTGACTCCCTTATGATTCGTTCAGCAATTCATTTTTTTACCCAAACCCCTCCTTTGCGTGAAGCTAATCTGCTGTGATTGGTCAGATATCCCAATCAGTTGTTATTGGTCGACTGCTTTCAGCGCGAGATAGAGAGAAGCACCCACCACGGCTATGAAGTAGCAGAGAGTATGCGAGAGCCCAATGCAGTAATGCAATAAAGCAATGCATTTAAACACGAGCATATTACTATGCTCTGACATACTTTCAATATTAATCCACATAATAGCAAAAGTTGAAATATTTAGAAAATTGACTTTGCCATGTCTGTGAGGAACAGCTGATAGCGGGCATAGCAAGGGCAAACAGCAGAGGATCTCGAGTTCAGAAACGCATTTAAATTGCTAAAGGAAGAAGCATGCTTCACATTTTTAATGTGGTTTTGGATGCAATATGTGAACAGCCCCATAATAATTTAACCTGAGAGATACAGTACAAGCACTGATCTTTAATAGATATGTGATTACAAGCCACATGGAGCGATTACAAGTTACAACACACAATTAAATAACGTTATTTTGCAAAATACAGAAAACAAGGCAACAATTTTAATTACACTTACATGTTATGATCCGGAGTTTTACGTTTTACCAGAACCGGCACTTCATATTTGGTCATGTACCATATTGACGTTGTAGTGTTCAAGCAAAAAATCTGAACCCAACACAATTTATTCATTTGACCCTGAGTTGACTCTTTCTTTAAAGAATCAATAGTTTTAAATGTTGCACTTTCAGATTTAAGCATCAGCTGGATGTTTGCATTCGCTTAGAGCTGTTACACACTGCATGGAAGCTCATTTTCAAAAACCCATAATAGAAATCAATATTTAAATCAATATGTTTTTTTTTTTCAAATGTTAGTATCAGTATGCTTTTCATTTGATACACTTGATCTCAGCCACTCTTACTGGCAGAGGAAGGAACTACTGTATGTCCCGTCCTGTGTACATATCGGTGTTGAGATTATGAATAAAATAATGCTAATTTTAAAGAATATGGAATGTGACGTGCACTGGGCATTTAAGATATTAGAGTAATACATCTAAGAGTTATAAACAAAGTTTTAAGAAAATAGGAATGATAGAGATGTTCTCTAATTATTTAAGGGAAAACTCAAGACTGATTTATACTCTATGCATCTGTCGAGTATGATGTTGGCAAAAGTTAGCTTTGAATGTGCCCAGCCACATCTGGTCAAGCTAAATGAATTTGCATAAGCGGACATTTTTATCACTCCAAAACAGCTGGCAGATAGGAAGTTTTTTTTTTCTTTTCTTTTTTTTGTAGCTTTGAGGAACAACAATTTATTTATTAAGTGCACAGGTTGTCCAAGGCGGTTTAAGTCAATTAAGTTTCATTTTTATTGCATATCAAGTTTTCTGTTAATTGTATTAAAAGCTAACTTTTTCATGAGTGTCCTCCAAATTTATCCATGAACTATTCATTTTACATAATTTAATTCATTCATTCAGCAACTCCACCTGCAAACAACTTCAAACTTCAGTAGCAATCCATAAAATTGCAATTCTAAGTGAAAGCAAAAAAATTTCCCATGTTACATTTTACTGAGGGTTTAGTTCAAGGCTGCACAATATATCGTCTCAGCGTCGATATCCCAATGTGCGTATCTACAATAGTCACTCAAAGATACACACAAAGATATGCACTGTTAATTCTGGATTATAGTTGAGCAGAATGTTTGACAGCGTCTATCTAAACGAGGATGTTATAAAATACATTTTATATTGAGATATTACTGGAGAATTTCTGTGGTTCTATAATATGGGTGGGTGCGCTCTCTGCACTGGTCCCTCCGTTAGTGGCGAGACCGCTCGATGCTTGATGCACCATGCCAACAGTCGATCGATGAGTAAACAAATATAATGAATGGAAATACACAGGCCTGTGCGTATAGACATAAAATATAATGCTGTACAGTAACGTGTCATTTGTTTGTTTTGGTTGTCATTATTGTAATTGTTTCGTGATGATGCGATAGTGTGCTTTATCTGCCTGATTCCGGGTGGTGGTGGGCGGGTGGTGAGATGTTTGCATCACGGTATGTTCTAGGGATGGGATTTGCGTGACGCGCTGAGAGCTACTAGCCCGGCAGTAGAAACGCGACATGATTTGAGCCTCACTACTCAACCTCCCTAGCGATTGGCCCATCCTGGCCCGATAAAATCCCTGGCTTGCACTGGCCCGACAGTGGAAATAAAGCTATTGATCCTGCAGACTTTTCCAGTTTCATTTGTGACCAGACCTTTGAGCTAAAAATTATGTTTTTATTTTTCCACAG
Seq C2 exon
ATGTACGCTGTGTTCTACGCAACCTCATTCCTGGATCTGTTTCGCAGACCTCACAGGGTGAACAGCACATCTAGCAGTCTAACTGTGATTGTTGACAGCGATGAGCAGTACCTTTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013892:ENSDART00000156995:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(30.5=40.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]