BtaINT0139338 @ bosTau6
Intron Retention
Gene
ENSBTAG00000033292 | SP7
Description
Bos taurus Sp7 transcription factor (SP7), mRNA. [Source:RefSeq mRNA;Acc:NM_001102142]
Coordinates
chr5:26848177-26855849:+
Coord C1 exon
chr5:26848177-26848220
Coord A exon
chr5:26848221-26852923
Coord C2 exon
chr5:26852924-26855849
Length
4703 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
ATGCTTCTCTCTCCCCACAGGAG
3' ss Score
13.26
Exon sequences
Seq C1 exon
GGGACCCGTTCCCCAGCCTCAGGATGGCGTCCTCCCTGCTTGAG
Seq A exon
GTAACTGCCCCCTCCTTCCCCCAGGACACCAGCCTCGATCTTAATGGTCCTAATCCCTGTCCACTCCCACCTTCTAACTCACACAGACTGTTGCTCTGGTGCTTGTCACTTCCAGGGGTCAGAGGAGGGGTGGGGGGCAGGAGAAAGGGGAGGAGAGAGAGCAGGGCAAGGGGTCACGGAGCAGTCAGATCAGGACTGAGGGGATTAGGTTAGAAGAAGGCATGGACCCCTGAGGTCCGCCAAGCACACCAGCTCTGAGGAGTGGAAGAGGGATTGAGGGATCGAGAAAGGAAGGGGAGGGGAGTGAAGAGAGAGGAGTGGGAGAGAGATAAACTGGTAGGGGACAGGGGGAGAGAAATAGGCCAGAGGGCTGGCTGAGTGGGCACTGGGCAACAGTGAGTACATGGTTCTTTGGGGGTCCTGACTCTGGGGACTCACCCTAAGCAGTGTCTTGTCTGGTTTGTAGGTGGGGAGGGGGCTGGGCTTCTGGGCTGGTAGCAGAGGAGGTGGGCAATGAGAGAAAGGAGAGGGCAGTCCATGTATGTGGGGGGGCTGACCAGAGGAACTGGGCCCAGGTCTGAGAGGCAACCAAGGAGGAGGGCCAGGGTCTGAGGCCGCCTGCCCGGCTCACAAATATTTAGCTTTCAGCCAAAGACAAACTCAGCTCTATTTTGGGAGTGGGAGGCTCCAGGGCGGACCGGGCCACTTCCCCTCCAGGCTGGGACCCCAGCATCCCTTGCCTCTGGCACTGAGAATGGAGGGAACCAGGGTACCACGGGGGTCAGGGCTTGGGGGCTTGAGAAACTGCTGACTCTGCCAGGGCTTCTGAGGGACTCATGGCACATCACAGTTGGAAAGGCGGACTCACAGTCACTCAGAGGCTGTCTGAATGTCCCGAGTTCTCCTTGCTTCTGGATCTCTGACTCTGTGTCTCTGTTACCACTTCTGCTTTCTGGCTCCCTCCATAGGAATTTGGGACCAGAGAGCCCTTCCCAAAGATCAACTCCCATCAGTGGCCTTGACCTTCTGTATTCTTGGGCCCCTCTGAAGGCCCCACATCTGCTCCCAGTACACTAGCTCATGTCCAAGCTGACTCATTCAGCCCTACAGGAGAGGTGTGTGTGAGATGGACCAGGAGTCTCTTAACACCTGTGTTCACTGGCCTGCATGTGAGTGTCAGAATGTAGAGCAGCACACCTGCACGTGTGGCTGGTTTTGTGGGAGCACAGGTGTGTGTGCAGGCTGGGTCACCCAAGTATCTGTTAGTCCAAGTGGGGAATGGTGTGTGTAAGGCTGGTGGATAGGGAACCTGTGACTGAGTTTGAGGGAATGGCATGTGAGGCAGTGGGGCGGACACCATGACCTAGTTGGGGGTCCTCAGGGGCTTTGTCTACCCTCTACTGCAAGGAGGCAGATTGCTCACCCCACCATCTCCCCAAGAGACTCTTGATTGAGCCATCATTGAAATGCTGTGCTTGGTCTTGAGGAAGCTGGAGGACTAAGGTGCATGGAAATCCTGGGTCCACCCAAGGCAGGGGCCGTGTCAATGGGCGTGGGCTTCATGCCAGAGTTGCCAGCGTGGCACTGGTGCCGGCGGGAGTGGCTGGGCCAGAGGTCTGCTGGAAAGACATGGGATTGGGGTAGCATTTGGCAAGAGGAGCGTGTCCTGGAAACTGGACTTTCTTATCCCTCATTCCCTGTAATCTGGAGATGCCCCTGATACCAAGGCTTCCAGCCTCTGTCTCTTTCATCTATTTTGAGGGGCACCTGGGCCCTCAAGCTTCTTCTTATACCCCCATCAGGAAGTCCTCTTGGACAGTGGGAAGAACTTGGGGGTTCAGAGAGGGAAGCGTGACAGGAGGCTCACCTGGGCTGAGTGAGATGCAGAGGATCAGGGAGGAGGGAGAAATGGGGATGGGGGCTAATGGGGACGGAGACTTGGGAGCTGGAAGAACTAAATAATTTGGGAGGAGGCTGAAAGTGGAGAACTGGAAACTGGGACCTCAGGTGGCCAGTCAGCACTCAAATGTCCAAGTGAGCCTTCCAGTGAGAGGTCAGGGGAAAGAGGGCGGGGTCCCCTCCCCATGTGAGAGTGAGAGCTGGGACAGCTCCTTATCTTGTTCCTTCTCCAGAGATTCCCCCTTCAGTACTTAAAAGCCTGTTTTGGTGTGGTTGGCATTGTTTTCAATGGATGTGGGTGGAAGCAGGAGGAAAAACAACTCGAAGGTGGGCTCCAGCCCCCGGGTCCCCCATATGGGGACACAGGCACACATATTTAGAATCCTTAACCAGGACCCTCTCCCTAGTTCTCGGGAGAGCCCAAGCAGCAGGACAAGGAAACTGAGGCTGCGATGAACCTTAGCCAAGTACCCAGCTCTTGGCCTCCAGAACCTTCTGAGCTGTCCGGTGCCCGGCTCCCCCTTCTCTGTCCCCCGGGCCCTGGGGCCCTCTGTTCCCCAGGGCGGGGGTCTCCTGTTGGCCTGGGGCTGCTTGCCTTCTCTCACCCCTCCTTCCCGCCCCATGGCTGGGTGGGGTCCTTGGGCTTGGCTGAGGCCCCTGTGGCCACAGTGTGAGGGCCGGGCGGGGGGGACGGCGTCGGCGTTTTTAAAAATAAACCGACCGCAGGGAAACCAACGGAGCCGGGCCAGGCAGGCAGAGGGGGAGGGGGTGGTCAGGGGGAGAGGGAGGGAGGAGTGGCCTGGTCTGGGGGTTTTCTGAAGCCCAGCACCGGGGGGGTTTTCTCTTAGGTAGGAAATTGGCCCTCCCACCTCCCCCCTTTCTTCCTTCCCCCTCCTTTCTTTGCTCTGCTTTCCTGTGCCTTCCTTGCCCAATCTCTTTCCATCACCTCTCTTTGTTTATTCTGCGTTCCTCTCTCTCCCTCCTTTTGTCGCTTTTTCCTTCTCTTCTCTTTTGCGTCCCTGCCCATTTCTGCCCCTGTGGGCCAGCTCCCACTGTTTTCACTCCCCCCCCACCCCCTACCACCAGGGACTTTAAGGTCAGGTTCTCACCCTGCGGGCTCCTCTGCTCTGTGGGTCTATGGGTTCTGCTCTATGGTTCTATGGGTCTCTGCCCCTCTCCTTTGCACAATATATTTTGACCTTTCCTTTCCACTAGGATTTGCCTCCTGCCCCAGCAGCTGCCCTGCCTTACCCACCTCCGCTTGGGAGGTGAGAGGCTCCAGGGACACCCTGGCTGGGAAGGATGCAGGGCTTCTGCCATGGCCAGATTTGAGGATGCTTTTGATGGTTCAAATTTGGGAGTCCATGGTGTCATCAGGACCTCAGAAAGAGGTCACTGGGCAGGGGGAACAGCAGGTTTCCCTTTGGGAGCAGGGCAAGGCAGGCGATTGCACACGCAGCCCTCACTGCAAGCCTTTAAACTTCAGATTTACCCCTAGGATTGGTGTCACAGGTGCAGACTACGTGCTCGGAGATAGCAGGCTGGCCTGGGAACCCTGGATTTTTGGGTTCTTTTTCAGTTTTACTGGGAAGGTACAAGGTACATTTTTGCTGCTGTCGTTGAGGGCCCCTGTCAAGGGACTATACAGGGTCAGCTTCTGACTTGTTTTTGGTGGGATTCTCAGTAATGGATGCCTATGCGTGCCAGCCAGAGATCCAGGAGGGCACCATTTCCTTATGGGATGTCCCAGAGCTGACTCAGGGAGGGGTACCGTGAGGGATGGTGATCTCAGGGAGCCTTGGCCTGGTAGCAACAGCACAATGGGCATTTGGTATTCCTAAAAGATCCCTGTGCCTTGCATCTACACACATTTCCCTCATTCACTGTGCTGGAGGGGTCTCTACGTGTTAGGGGACACTGAGGCATGGAGGGAGGGGTGTGGCGGTGAGCCACTATCATAGCCAATCCAATTCCCTGCCCTGGAGGGGTGTGAGGATTTCAGCTCTCCAGGCCCTCCCAAAGGGGTACCAGCTGGCTCCACAAAGCAGGAGGTGCCTAATGCCCGCTTGAAAGACATTCTTGCCTCAGCCACAGCCCTGGCTTGGCGGCAACCCTGTTCCCTCTCAATGTCCCAGTGTCTCCGCCGTCGCTTCCTCTTGCTCCCTGGCCCAGGGTCCCTGCCAAGAGAAAGAGATTCCTTACCAGGGACATGAGGACACTGCTTTAGGGTGACTAGGCCACTGCCTTAGTCAGGAGATGAAGTAGAGACAGGAAGTGAATAAGGGGTCAAGCTGGGAAAACCTGGAACGGGGGCAACTACGGTCCCCTAAGACTTTGGCTTTTCCCCCACGCTGCTCTTTCAGCCTCGTCTTTCCTTTCCAAGTCCCCCACCATGGCCTCTGCTCCCAACCCACTTCCAGGGGTCAGGATCCCTAATACTCACCGCATCCGGGTGCTGCCTTGATCCCTGGCTCTTCTTTCTCATGGCTTTTTAAGAAGCATCTCCTGTTCCTCGGAGGCCCTTGCACATCCCCAGCATCACAGGGAGCTCTGCTTCCTGCCTGCTAGGTTGGGTGTCACCGTCCCTGTCTTGGTCCTCTGCTCTTTTTCCAGACTCTATCTGAGCTCTTCCCTGGGTCCCAGTCCTCACTGCCCATCCCTCTCCCCGACCTTACCTCTGAATCCCCATCCTCTTCACCTCTTCCTCACCACCTTTGTTCTTCTGTTCTCCAGGTCTCCAGGCTGTGCAGTCCTTCTGCACATCTCCTTTTCTCCACCTAACCAATGCTTCTCTCTCCCCACAG
Seq C2 exon
GAGGAAGCTCACTATGGCTCCAGCCCCCTGGCCATGCTGACAGCGGCGTGCAGTAAATTTGGCAGCTCCAGCCCTCTGCGGGACTCCACGACACTGGGCAAAGCAGGCACAAAGAAGCCATACTCTGTGACCAGTGACCTTTCGGCCTCCAAAACCATGGGGGATGCTTACCCAGCCCCCTTCTCCAGCACCAATGGGCTCCTCTCCCCACCAGGAAGCCCTCCAGCGCCCACCTCGGGCTATGCCAATGACTACCCTCCCTTTTCCCACTCGTTCCCAGGGCCCACGGGCACCCAGGACCCTGGGCTCCTAGTGCCCAAGGGGCACAGCTCTTCTGACTGCCTGCCCAGCGTCTACACCTCTCTGGACATGGCACATCCCTATGGCTCCTGGTACAAGGCAGGCATCCATGCAGGCATCTCACCGGGCCCAGGCAATGCTCCTACCCCTTGGTGGGACATGCATCCTGGGGGCAACTGGCTCGGTGGTGGGCAGGGCCAGGGTGATGGGCTGCAAGGGACACTGCCTGCAGGCCCTGCTCAGCCTCCACTGAACCCTCAGCTGCCCACCTACCCGTCCGACTTTGCCCCCCTTAATCCAGCCCCCTATCCAGCTCCCCATCTCCTGCAGCCAGGGCCCCAGCATGTCTTGCCCCAGGATGTCTATAAACCCAAGGCGGTGGGCAACAGTGGGCAGCTGGAGGGGAGCGGTGGAGCCAAACCCCCCCGGGGTGCAGGCACAGGGGGCAGTGCTGGCTACGGGAGCAGTGGAGCAGGGCGCTCCTCCTGCGACTGCCCCAACTGCCAGGAGCTGGAGCGCCTGGGTGCTGCCGCAGCCGGGCTGCGAAAGAAGCCGATCCACAGTTGCCACATCCCGGGCTGTGGCAAGGTGTATGGCAAGGCCTCCCATCTGAAGGCCCACTTGCGCTGGCACACGGGCGAGAGGCCTTTCGTCTGCAACTGGCTCTTCTGCGGCAAGAGGTTCACCCGTTCGGACGAGCTGGAGCGCCACGTGCGCACTCACACCCGGGAGAAGAAGTTCACCTGCCTACTCTGCTCCAAGCGCTTTACCCGAAGCGACCACCTGAGCAAACATCAACGCACCCACGGTGAGCCAGGTCCAGGACCCCCACCCAGCGGCCCCAAGGAGCTGGGGGAGGGCCGCAGCACTGGCGAAGAGGAGGCCAGTCAGACGCCCAGACCTTCTGCCTCACCGGCACCCCCAGAAAAAGCCCCTGAAGGCAGCCCGGAGCAGAGCAACCTGCTGGAGATCTGAGCCGGGTGGAGGTCTCTAGCCCCCTGAGTCTGCCTTTCCAGCCTCTCCTGGCTCTGTGGACCACTGCTTGCCCCTCACCCCCTTTGACCCATGCATGTTGCCCTTTGCAACTCTATCCATCTTTCCCTCTTCCCACCCATTCTGGGCCTGGGTATCACCCTGCATGCTTCCTCAGCTTACTTCCTCCCCTTGCCATGAGACCCTTCTGCAAACTCTCATCTCAGGCCGTCACCTGGTGCCTGATCTCTGCACTCAGGGCGTCAGAAGCTCTTTCCTCGCTACTGCTCAGTTTCTCTCTCTGCTCTTACCAAACCAACTCACTTCCCCTCCATCTGGGCTCCCAACACTTCATTTCTCCATCTCACCGACTCCTTTATGTGCATCTTTTCTGCCTCCCAAGCTTATTTACCACTATTCCTTAGCTTTCAGGCTCCAATCTTCTCAACTTTGTAGTCCACTGCCTTCTATGCTCCAGACCGTTTTTTTTACAAACACAGTCATGATGATGATAATGATAATTTATTGCCCCCTGGTGGCCTCTTCATTAGGGACCAGAGTTCAGGGGATTGGGGTAAGTGACCTGGCAGGGAGCAGGGTGCCAAGAGGGGGCAGACTGGTGGGGATCTGATCCCAAAGATGGGGTGACCCCAGGGTCAGGGAGGCTGCCCCCAGGCATGTATATTTAACCCCTATGTTCCAAGAGAAATGAATAGTAATAATAATAATTCTATTTATCTAAGTTATGATGACAGGTCAGGTAGAGTGAGCTGGGGAGGGAAGGGGGTCCATTTCTGCTATGGAAATTTTAGCCAAATGCATCTCTGTCTAGAAAAAGTGATAGTGGAGATCTTGTTAATAGAACTTCTATCATCAGGGTCTCAGTTAATGGTGTTTCTCTTAACAGAATCTCTGCTAATAGAGTGAATTAGCTAGATCTCTGTTAATGAGTTGATGGGGTATCTCACAACTAGGGGATCCCTAATATTTCCAGCCCTAGCCAGAAGCTGTGAAAACTCAAGCCCTATGGAGGGGAGAACTGGAATGTACTCCAGATTCCTTGACCCCAGAGCAGGTTCTTCCACTGCCCCTCCTGACACCATGACCCCATTAGGCTAATCCCTTGTTGCCACCTTTAACAGAGCTTGCAGCTGCCATCTTAGACATGCTCTTTGGGGAAGCCCATCTAACCCAAGGAGGACATTAGTTTGGAGGTGTCTCTCCTGGAAAAAAGGCGGGGAAGGCTTCCTCTGGGATCAGATCAAGAAAATCGAGTATTTATTGAGTGCCTACTCTGTGCAAGGCACTGTGATAGGCTGGTGCCCAGAAGTCATGAGAAAGAAGAATTTATAGACCTAGGAGGACAGAGGTCCCCAAGCTGCCTTGGGGTTGCATCCACAGGCCGGCAACCTGGGACTTCCGATGCTCCCAACTCCACCTCCAGTGACTTTTAAAGCCGCTTCGTGCCTTTGAATGCCTTTCCTGTGACTTTGGATCCTCCTTTTCTATTTCTTGCTCCCTCAAGGCCCCAAGTTAAAGGGTTAAAGCCGCCGGAGCTTGGGGAGAGGGTAATATTGTGGAAGGGAAGGGATCAAGCCCTCATGGAGTCTTTTTTTTTTTTTTTTTTTAATTTAATAAATAAAAGTTTGATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033292:ENSBTAT00000005689:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.620
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]