MmuINT0150764 @ mm9
Intron Retention
Gene
ENSMUSG00000060284 | Sp7
Description
Sp7 transcription factor 7 [Source:MGI Symbol;Acc:MGI:2153568]
Coordinates
chr15:102187608-102196702:-
Coord C1 exon
chr15:102196645-102196702
Coord A exon
chr15:102189834-102196644
Coord C2 exon
chr15:102187608-102189833
Length
6811 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
CCCCCCCCCTCTCTCTACAGGAA
3' ss Score
14.77
Exon sequences
Seq C1 exon
CTGCCTGACTCCTTGGGACCCGGTCCCCAGCTCGAGGATGGCGTCCTCTCTGCTTGAG
Seq A exon
GTAACTGTTCCCTTCCTTAAGAAACCAGCTACAATCTTCCTGGTCCTAATCCATGCCTACCCCACCCCCTCGGCTCACATCGACAGGAGCTGCAATGCTAGTCACTTCCAGGGTCCTCCTCATGAAGAGGAGTAGGGTCCTGGGAGGGGCAAGCAGAGGGTACAAGCAAGGAAGGGGAACATAGCCAGGGGTCAGAGGGCAGTCAAAGAAGAAAGCCAGGACCACGAAGGTCAGCTAAGCCACTGGCTGTGGGAAGTGAAAAGGCATTGGAGACAGGAAGGAGAAGAGATGGGCAGGGAAAACAGGTAGGCTGACAGCGGATGGTGTCTGAGTGAGGACGGAGAAGACTTCAGCTACTATTCTTTGGGTTGGGGGTGTACCATGTCTAGGGCTCCCACATTAAGCAAGATCTGGTCAGGTCTGTGTTGAGGAAAGAGCCTGGTCTGTTAGCTGGTGTGTGGGAGAGGAGGAGGGCAGTCCTGCATGTGGGGGGCTGGCCAGGGGAACTGAGCCCAGGACTGAGGGGGAAGCAAGGAGGAGGGACAGGGTCTGAGGCCGCTTGCCCGGCTCACAAATATTTAGCTTTCAGCCAAAGACAAACTAAACTCTATTTTGGGAGTGGGAGGCTCCAGGGAGGACTGGGCCACTTCCCCTCCAGGCTGGGACCCCAGCAGCTTTCCCTTGCCTCCCTGTTTCTGAAGATGAAATAACCAGGGTACCGTGTGAGTTTGGGGTCTTAGAAGCCATGTACTTTGTCGGGGCTCCTGGGGGACCCAAGGCACAGAGTTGGAAGGAAGGACTCAAGCCACTCAGAGCCTGAGTTCTTCCACGTCTCATAATGTTTCCGTGTCACCATCTCTAGGCTGCCTTCAGGGTATCTCTGAAGGAATCAGGGGTGAGATGATACCCCTTGGATGTCAGTGCCCTCCGGTAGCCTCAAATTGTCCCTATTCTTGGGGCCTTATCTCAGTCCAGTGTAGCGGCACAAATCTTTAATCCCAACACTTGGGAGGCAGAGCAGAAGCAGGTGAGCTTGAGGCCAGCCTGATCTACATAGAGAATTCCAGGATAGCCAGAGCTACATTGAGAAACCCGGTCTCAAAAACAAACCAACAAAATCTCTGTTCTGGGTGCCCTCACTCAGGTCCCAGGAGTGACTAGTCTTTGCTGATTGACTCATCAGAAAGCTGACTAGTTCAACCTGAAGGAGAGAGTGTGTGTGTATGTGTACCTGCATGTACATATGCACAAGAGCGCATGCACACACACAAGCTGGATCATCTTAGTACTTAGTCCAGATGAGAAATGGTGTCTGTAAGGCTATGAGATAAGGACTTGATGACTGAGTTTGAGGAAGTGCCATACAAGCCAGTGGGTGGACATGCTCTATAACCAGATAACCCAGGAATATTGATCTACTTTCAGCTGCATTGTTTGCAGATTGTTATCATGCCCCTTTCCCCATCAGACTCTAAATTTATTTATTATTATGTAAATGTATGACCATGGGCACATGTGTGCCACTGCTCCTGTGTGTGGGCCAGAGGAAAACGTTTGGGAATCAGTTTTCTAATTCCACCTTGGATTCTGGGAATTAAATTCAAGTGGGCAGACTTTCCTGGGAAGCTGCTGAACCTTTATCATCATCATCATTACTATTACTGTTGTTATTATTATTAATTATTTTTACTCAACAGACTATGTTGCGCTATCATTAAACAATAGTTTTGAGGAAGCAGGAGGAGAGAGGTGCATATAAGTCTTGGGTCTGCCCAGGGCAGTAATGGTGTCAATGATATGGACAGCATGCCTGCCCTGCCAGCGTGGCACTCGTGCCTGGGGGAGGGGCAGTTCAGAGACTTTCTGGAAAGACACAGGCTTGGGGAAGCATTTGGCAATGGGATGTATCATGGATGCTAGGTTTTCAGGTTCCTCTACTCCCTGTGGTCCACCAACATAAAGACACCCCACTCTCTCCATTTCTTTCCTTTTTCCTTCCTTTTAATCATTTATTATCTATTTATGTATGTATTTATTTATTTATTTATTTTGAGACAGGGTCTTTCTTTATAGCCCTGTCTGTCCTGGAACTTACTATGTAGACAAGGCTGGCTTCAAACTCAGAGATCTGCCTAGCTCTGTCTCCCCAGTGCTGGGTTACCCGGCAGTGTCTGTTTCTTTTACCTAGTTTTTAGGGTCCTGGGTACTTTATCTCCTCCCCAATGCCTTGTGAATCTCTCTACCTGCTATGAGTAGGTTCTCCAGCAGTGGGAGGAGCTTGAGATTCAGAGGACAGCAGCTGTTGGTGGTAAGGGGATCAGGGAAGAGGGAGAGATGGGGAGAAAAGGACACTAGGCAAGAAACTGATAAGCCCCCAGTGCTCAGTGCTAGGGTGGTTGCTCAGCAGGGAAGGGACCTGGGCTCAATTCCTAGCATGCTAAAAGATACGCATGATATGATAAAAGAAACTAATTTAAAACAAACTGCAAAGCTGGGTGAGTGAAGAAAGTGGGGAGAAAGCTGGGAGCTAGGAACAGGGACTTTGGGTGTTCAACTTATGTAGTGGCAGTCCCATCTCCCTCCCTCTCTCCCTCCCTTCCTTCCTTCCATCTAGCCTCTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTTGCGCTGTAGACCAGGCTAGCCTCAAACTCAGAGAGCTGCCTGCCTCTGCCTCCTGAGCACTGGCATTAAAGGCCTGCGCCAGTACTGCCCAGCTCAGCTATTTTCATTTTTTGAGACAAGGTCTCGCTATGTCTGTCCTGGAACTCCGGAATAGAGTTAGGGTTAGACTATTTGGACTAGGCAGGCCTCAAGCTCACAGAGATCTGTCCTTCTGCTTCTGAGTGATGGAATTTCGGGCAGGAATCACCATGCTGGTCTAAGCCTATTATTTTAAAGGGTGGTGGAACAAGAATAGGGACTGGGAAACGGGAAAGTGGGTATCCTGGGTACTACAAGGTAATACATATGATCAGGTATAGGCAGGAGCGCATGCTCAGAACCCTGGACCCTATTCCTCAGTTCTCACAGAGAGAGCAATCAGCCAGAAAAGGAAACTGAGGGTATGAAGGAACTTAACCTCCAGTGCTTGGCTCCCGGAGTTGTCCAGTACTTTGGTTTTTCTTTCTGGCCTCCAGGGGCCGTGTTGGCCTTGCTCCCCAAAGTCGGGGTCTCATGTCAGTCTAGGGTTGGCTGTCTTCTTTCACCCCTCCCTCCCTCCCCACAGCTGGGTGGGGTCCCTGGGCTTGGCTGAGGCCCTTGTGGCCACAGTGTGAGGGCCGGGCAGGCGGGGGACCGCGTCGGCGTTTTTAAAAATAAACCGACCGCAGGGAAGCCACCGGAGCTGGAGCTGAGCAGGGCCATGCTGGGCAGAGGGGGAGGGGGCAGCAGCTAAGGGGAGAAGGAGGGAGGAGTGGCCTGGTCTGGTCCGGGGGTTTTCTGGGGCCCTTTGCCATGGTGGGTTTCTCTTGGGTGGGAACGCTACGCAGTCCTCCTCCTCCTCCTCCCTCTTTCTTCACCTCCTGTGTTTTCCTTAGCTTTTCTGGCCCAGGATCTCATACCACCTCTCCTTTGTTTATTCTGCTTTCCTTGCTCTCCCTCCCTTTTGTTTTTTAACTTTCCTGTCCATTTCTGCCTCTTCATGCAAGCTTCTCTCCCTTAGGGTCCCTCTTGCTCTGTTCTGCGGAGCTTTGCATGCCAGTTCCTCCTCGGGCACAGCGGACTCTGTGCCCCATGGTTTTGGATCTCTTGTGTCTTTGAACCCCCATGTTGCTACCTCTCCTTCATGCTAAGTTCGATTCCTGCCTCCCCCCGCCCCCCAGCTCTCCCTTGGCTTGGACCATTAGAGGGTCCAGGGAAAGCCTTACTGGGAAAGCTCAGGGGTTGGACAAGGTTTTGGTGGCTCTTACTGGGAGCCCATAGGATTGGCAGGATATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGCAGAGAATTGGGCAGGAGTGTAGTATAGTGATTACACATACCTTCACTGGAACCTTGAGACACCAGTGTCACCTCTAAGACTTGGCATCACATATCTGAGAGCCCTGGATTCTCTTCTCCTTCATATGTTTTTACCAGACAATTATATAATTGACTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTTCTTTCTGACACAGGGTTTCCCTGTAGCTCTGGCTGTCCTAGAACTCGCTGTATAGACCAGGCTGGCCTTGAACTCAGAGATCTGCCTGCCTCTGCTTCCCCAGTGCTGTGCTCAAAGGTGTGCACACCTTTTTTGTTTTTATTTTATGTATGTGGGTGTTTAGCCTACATGCATGTGCGTACATCATGTGTGCTCCTAGTGTGGTCTGTGGATCCAGAAGAGGGAGTAGGATCACTTGGAACTGGAGTGACACATGGCTTTGAGCTGCCACATGGGTGCTGGGAATCTAAACCCAGCTCTCTGGAAGAACAGTAAGTGCTCTTAACTGCCAAGCCATCGCTCAAGCCCCAATGGTTAGCTTTTAAAAGATGTTTAGGGGGGCTGGAGAAATGGCTCAGCAGTTAAGAGCACTGACTGCTCTGCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCTCTCTTCTAGTGTGTGTCTGAAGACAGCTGCAGTGTACTCATATAAATAAAAAAATAAATCTTTAAAATAAAAAAGATGTTTGGTAAACACACATACACACATAGAGGGAGAGGAAGGGGGGAGAGAGAGAGAGAAAGAGAAAGAGAGGAGAGAAGAGAGAAGAAGTGTGTATGGTAAGGGTACATTTCTGTGAACGCCATGTCAAAGCATCTGAAGAAGTCTGAGGACAACTTCTTTGTGGGAGTTCTCTCCTTCTAGCACGTGGGTTGTGGGGTTGACTTCAGGTCACCAGGTTTAGTGGCAAATGCCTTTACCCATCAGGCCTTCTCGCTGGTCCCACAAAATCAAGCTTTTGAAGGATGTCTTATTCTTTCTCTTTTTTTTTATAAGTCAATTTGGTTGAACCCCAGGACCTTGTACATACTAGCCAAGGATGCTGGAGTGTATTTCTTCACAAGAGGTTCTGATTCTAACCTACAGGGGGTACCAGGAGGTCCTGAGGGTGGTCAGATTGGTCATGGCAGTTTGGTAGGCACTAAGGAGCTATTTCTTTCTTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATGAGACAATGTTTCTCTGTTGAGGCCTGGCTGTCTTAGAACTTGCTCTGTAGTCTAGGCTGACCTTGAACTCATAGAGATCTGCCTGCCTCTGCTTCCGGAGTGCTGGGACTAAAGATGTGTGCCACCCCTGCCTATCTACCTCTGTGTTTCTAGCCCCTCTACCCCCAGCCCATTTTCATGTTTTTCTCCGTCCACAGGACTGAGTGGGATGGGAAGGTGCAGATCGACCCCATGCACTACGCCTTGGGAACACTGAAGCTGTGTCCAGGGTCTTAACCAGCTCCCCGTCGCGGGGAGTCCCGAGGACTCTGTATTCTTTCACTGCTCAAAGGGACGCTAGCTGGTGGTGCCCAGTGCCTGCTTAAAAGGCATTCTTGCCTCACCACAACCCCCGGCTTGGCTGAGGCCCTGTTCCCTCTCAATGTCTCAGTGTCTTCTGCTGTCCCTTCCTTGAGCTTCCCGGATTCAGAGTGCATGCCAAGAGATCCCTCATTAGGGACATGTAGACTTGACCTCAGGGAGATGAGAAGACAGCGGCTCCTTAGTCAGGAGCTGAAACAGAGACAGGGAATAGAATTGAGGTGAAGACAGGAAAATCTGGAATGAGGCCGGACATTGTCCCCAGCACCACTTCTCTTTGTGTCCCACACCACTTTCTGTGGAGAAGGTGTGGAAGATGGTGTCTTTGCTGTGCTCACCAAGCTGGTCTCAAAGACTCCTGGGCTCAGCCTGCAGAGAAGCTAGGCTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGAGTCAGGGTCTCTCTACATAGCTCTGGCAGTTCTGGAACTTACCATGTAGGCCAGGCTGGCCTTGAACTCCTGCCATCACACCAAGCCTGCTTTGTGTTTGGAATTTGTGATGTAGCTGAGGATGACCTGAGGTTCTGATCTTCTTTGCCTCTGTCTCCCGAGAGCTAGGGTTATAGGTGTATGCTACAATACATCCAGGCTATAATCCTCTTGGAGTCCCTGGTCGTAGCTGGGTTTCTGTCTGCTTCAGATCCACTTTCCTAGGTCAGGACCTTTAATCTCACCTCAGCCAGCTGGCTGCTTCTTTTATGTCAGCTCTTCCTCAGAGACACTTGTACACCCCTGTTGATTCCACAGGAGGCTCTTCTTCCTGTCGGCTGTACTTGCCAGGCCTCACTGGCATACCAGTCTTGCCTCTATACCCTCTCCTCTCTGCCTCTCCCTAACCTCTGTGCTGGTCTCAGACCTATAGCTATGCCCTTCACTCTATCCTCTCTTCCTCCCTCCTAAGCAGTGCCTCTCTCTCCCCCCCCCCCCCTCTCTCTACAG
Seq C2 exon
GAAGAAGCTCACTATGGCTCCAGTCCCCTGGCCATGCTGACTGCAGCCTGCAGCAAATTTGGCGGCTCTAGCCCTCTGCGGGACTCAACAACCCTGGGGAAAGGAGGCACAAAGAAGCCATACGCTGACCTTTCAGCCCCCAAAACCATGGGGGACGCCTACCCAGCTCCCTTCTCAAGCACCAATGGACTCCTCTCTCCTGCAGGCAGTCCTCCGGCCCCAGCCTCTGGCTATGCAAATGACTACCCACCCTTCCCTCACTCATTTCCTGGGCCCACCGGTGCCCAAGACCCTGGGCTCCTAGTGCCTAAGGGGCACAGCTCGTCTGACTGCCTGCCTAGTGTCTACACTTCCCTGGATATGACTCATCCCTATGGCTCGTGGTACAAGGCAGGCATCCACGCAGGCATCTCACCAGGTCCAGGCAACACACCTACTCCTTGGTGGGACATGCACCCTGGGGGCAACTGGCTAGGTGGTGGTCAGGGCCAGGGTGATGGGCTGCAAGGGACACTGTCCACAGGCCCTGCCCAGCCTCCACTGAACCCCCAGCTGCCTACTTACCCATCTGACTTTGCTCCCCTTAACCCAGCTCCCTACCCAGCGCCCCACCTCTTGCAACCAGGGCCCCAGCATGTCCTACCCCAAGATGTCTATAAGCCCAAGGCGGTTGGCAATAGTGGGCAACTGGAGGGGAGTGGTGCAGCCAAACCCCCTCGGGGTGCTGGCACAGGGGGCAGCGGTGGATATGCGGGCAGTGGGGCAGGGCGTTCTACCTGCGACTGCCCCAACTGTCAGGAGCTAGAGCGGCTCGGGGCAGCAGCGGCTGGGCTGAGGAAGAAGCCCATTCACAGCTGCCACATCCCTGGGTGCGGCAAGGTGTACGGCAAGGCTTCGCATCTGAAAGCCCACTTGCGCTGGCACACTGGCGAGAGGCCTTTCGTCTGCAACTGGCTTTTCTGCGGCAAGAGGTTCACTCGCTCTGACGAGCTGGAGCGCCACGTGCGCACTCACACCCGGGAGAAGAAGTTCACCTGCCTGCTCTGTTCCAAGCGCTTTACCAGAAGCGACCACTTGAGCAAACATCAGCGCACCCACGGGGAGCCAGGCCCGGGACCGCCCCCAAGTGGCCCTAAGGAGCTGGGGGAGGGTCGCAGCGTCGGGGAAGAAGAAGCCAATCAGCCGCCCCGATCTTCCACTTCGCCTGCACCCCCAGAAAAAGCCCACGGAGGCAGCCCAGAGCAGAGCAACCTGCTAGAGATCTGAGCTGGGTAGAGGAAGGTCTCCAGCTCCAGGGTCCTCTTGCCAGGCTCTCTTGGCGCGGTGGACCCATTGGTTGCCCCTCGCTCTCTCCTATTGCATGCTATACTCTGGGGGCTCTCTCTGTTCCCCTAGGTTATCTCCTTGCATGTCTCCTCAGTTCTTCTCTCTTTGTCAAGAGTCTTAGCCAAACTCCTCTCAGGCCTTTGCCAGTGCCTAGTTCCTATGCTCCGACCTCCTCAACTTTTTCTTCTCTGCCCCTGTTCTTCACAGCTTCCATCTGGCCTCACATCATTTTCTCATTAACTCGTTGCCATCTAATCTTTCTGCTTCCCAATCCTATTTGCCGTTTTCCCGAAGCTTCCAGGCTGTCGCCTCGATTCCCCCTGAGCTTTGTGTTTTCTTTTTTTAAACAAACACGATGATGATGATGATGATGATGATAATTTATTGCCCCCTGGTGTTCTTCATTAGGAACCAGAGTTAAGGAGATTGGTGTTAGTAACCTGGCCGGGAGCAGAGTGCCAAGAAGGGGGAAGTCCAATGGGGATCTGATCCCAAAGATGGGGTGACCCCAGGGTCAGGGAGGCTGCCCCCAGCCTTGAGTACTTAACCCCTATGCGCCAGGAGTAAAGAATAGTAATAGTAATAATAATAATAATTCTATTTATCTAAGTTATGATGACGGGTCAGGTACAGTGAGCTGGAGAGGGAAAGGGATTCTCCCCGCCCCCAAGGAAATTCTAGTCAAATGCATCTCTGTATAGACAAATGATAGTGGAGACCTTGCTCGTAGATTTCTATCCTCGAGGTCTCCGAGAGTTTCTTTTTCAGTTGAGTTTTGGGTTGTTCGGCCTCTTTTAGAGTTTCTGTGGGTGTCTCTCTGTTAGGCAGTCACTAAGATCCCCAGCCCCAGCCAGAAAGCTGTGAAACTTCAAGTCCTATGGCGGGGAGGACTGGAATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060284-Sp7:NM_130458:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.627
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: