HsaINT1042695 @ hg38
Intron Retention
Gene
ENSG00000170374 | SP7
Description
Sp7 transcription factor [Source:HGNC Symbol;Acc:HGNC:17321]
Coordinates
chr12:53326575-53335693:-
Coord C1 exon
chr12:53335626-53335693
Coord A exon
chr12:53329421-53335625
Coord C2 exon
chr12:53326575-53329420
Length
6205 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
GTGCGTCCCTCTTTCCACAGGAG
3' ss Score
11.69
Exon sequences
Seq C1 exon
CTCTCTCCATCTGCCTGGCTCCTTGGGACCCGTTCCCCAGCCTCAGGATGGCGTCCTCCCTGCTTGAG
Seq A exon
GTAACTGTCCCCTCTTCCCCCCAGGAAACCAGCCACAACCTTAATGGTCCTAGTCCTTGCCCACCCACCTCCTCCAACTCACATAGATAGTAGCTGTGGTGCTTGTCAATTCCAGGGGTCCTTCTGATGAGGAGAGAGGAGTGGGGTCCAAGAAAGGGGAAGCAGAGGGCAGGAGAAAAGGGAGGGAAGAATAGGGCCAGGGGTCAGAGGGCAGTGGAAAGAGGGTGAGAGGGGATTAGGTCAGAAGAAGGCATGGACCCCTACCTAAGGTCAGCTAAGCACACTGACTGTGAGGAGTGGAAAAGCGATGGAGAAAGGAGGGGGAGGGGGGCGAGGGGGAGTGAGGAGAGAGGGGTGGGAAATACATAAGCTGGCAGAAGAGATAGAAGGCAGAGAGGACTGGCTGAGTGGGCACAGAGCAGCAACTGGGTATAGCTCTTTAGGGGTCCCGTCTCCTGGGACTCGTAGCCCAGACAGGATCTTGCCTGGTTTTGTGGGGAGGGGGCTGGGCCCGTGAGCTGGTGTGTGGAGGAGAGGAGGTAGGCTATGAGAGAAAGGAGGAGGCCAGCCTGTGCCTGTGGGGGAGCTGACCAGGGGAACTGAGCCCAGGCCTGTGAGGGAACCAAGGAGGAGGGACGGGGTCTGAGGCCGCTTGCCCGGCTTACAAATATTTAGCTTTCAGCCAAAGACAAACTCAGCTCTATTTTGGGAGTGGGAGGCTCCAGGGCGGACTGGGCCACTTCCCCTCCGGGCTGGGACCCCAGCATCCCTTGCCTCTGGTGCTGGGGACAAAGGGAATTGGGGTACCACTGGGGTCAGGGTTTGGGGTCTTGAGAAATTTCTGACTCTACTCTGGCTTCTGGGGGACCCAAGGCACAGAGTTGGGAAGGCAGGGCTCACAGCCACTCAGGGCCAGATTCCTCCCTGCTTCTGGGTCTCTGACACTGTTCCTCTGTCACCATCTCTGTCCTGCTTTCTGGGTCTCTCTGCAGGAATTTAGGGCCAGAGGGCCCTCCCTGAAAGTCAGTCCCCTTCAGTAGCCTTGACTCTTCCCTATTCTTGGGTCCCACATCTCTCTTCCCAGTGCCCTAGCTCAGGCCCAGGGGTGCTGGGCCAAACAGGAAGCCAACTCACTCAACCTGTGGGAGAGGTGTGTGTTTGTGAGATGGGGCAGGAGTCTTTTAACACCTGTGTTCATTGGCCTGAGTGTAATCGTTAGGGTGCAGTCGAGGGTGCCACAGGCCCTGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTTGGGCCATCTGAGTGCTGTGAGTCCAAGTGATAAATGGTGTGTGCACAAGGCTGTGAGATAGTGAATTTGTGGCTGAGTTTGGGGGAATAGCATGCAAGCCAACCAGATGGACACCACGTCCCTTGTCACACTCTGTATCCAGCCAGGGGTCTACCCGTAGCTGCAATGGGAGCAGACTGTCATCCTGCCACCTCCCCAACAGACTCTATTTTGAGCCATCATTGAAACACTGTGGTCTTGAGGAATAAGATGCATGGAAATCCTGGGTCCACCCAGGGCAGGGACAGTGTCAGTGGGCGTGGGCATCATGCCAGTGTTGCCAACGTGGCGCTGGTGGCTTGGGAGGGACTGGCCCAGAGGCCTGCTGGAAAGACATGGGATTGGGATAGTGCATGGCGAAAGGAGAGTGTTGTGGAAGCTAGACTTTCATGTCCCCTCACTCCTGTGAGCTGGAGATGCCTGCAACACGAAGGCACACCAGTCCCTCCTGTCCCTCGACCACTTGCACCTAGTTTTTGAGTACCTGGGCCCTCAACTTCCTCCCCACCTCCCCAGGAAGCCCTCCACCTTGTATGGGTGGGCTCTCTGGCAGTGGGAAGCAGCTGCTGCTTGATGGGGGGCTCACCTCGGCCAAGTGAGATTCAGGGGAACAGGGAAGGGGAAGAAATTGTTGGGGGCCTAGGTGGGAAAGGAGAATTGGGAAGCTGGGAAAACGAAGAAACTTGGGAGAAGGCTGAGAAAGTTGAGAACTGGAAAATGGGACCTTGACTGCTCCAAACCTAAGGCCAGTCAGCCCTGAGATGTCTAGTGAGCACTTCCGCTGGGAGGCCAGGCTGGGCACTGCACCATGAGCTCCCTGGGAGGAGGGGATCCCCCTCCCCTGCTCCACATCTGGGTGGGAGAGTTGGGACAGCTCCTATCTTGTTCTTTTTCCAAACACTCCCACTTCAATACTTTAATTCTGTTTGTCTTGTTTTGTTTTGTTTTAAGGGTGGTGGGGTGGAGGTCGGGAGGGAACAACTCGAAGGTGGGACTGCTGGGCCCTGGAAAGGGAACACATTTGATCAGGTATGGGGACACATGTTTAGAACTCTTAACCAGTGCTCTTTCCCCAAGTTCTCAGGAGAGAACAATCAGCAAGAGAAGGAAACTGAGGCTGTGGTGAAACTTAGCCACGTGCTCAGCCTGTAGCCCCCAGAGCATTCTGAGTGGGTCTGGTTCCTCGCTCCCCATTCCCTGCCCTCGAGGGCCCTCTGGGCCTCCACTCCCCAGGGCTGGGGTCTCCTGTTGGCCTGGGGCTGGCTGCCTTCTTTCACCCCTCCTTCCCTCCCCACAGCTGGGTGGGGTCCCTGGGCTTGGCTGAGGCCCCTGTGGCCGCAGTGTGAGGGCCGGGCGGGGGACGGCGTCGGCGTTTTTAAAAATAAACCGACCGCAGGGAAACCATCGGAGCCGGGCTGGGCAGAGGGAGAGGGGGCGGTCAGGGGGGAGAAGAAGGGAGGAGTGGCCTGGTCTGGGGGTTTTCTGGGGCCCAGCACCATGGTGGTTTTCTCTTAGGTAGGAAGGCCGCCTTCTTCCTCCTCCTCCCCCTTTTCTTTTTTCCACTCCTTTCTTTTCTTCTCTGCTTTCCTTTGCTTTTCTAGCCCAGTCTCTTTTCCATCATCTCTCCTTCTTAGTTTGTGTCTTTTTACCTTTCTGGTCTTTTAGGTCCCTGCCTATTTCTGCTTCTTTTTTGTTGTTGCTGTTGTTTTTGAGACAGGGTCTTGCTGTGTTGCCCAGGCTGCAGTGCAGTGGCACAATCATAGCTCACTGCAGCCTCTAACTACTTAGCTCAAGTGAGCTTCCCATCTCAGCCTCCTGAGGAGCTAGGACTACAGGCATGCACCACCAAGCCCAGCTAATTTTAAAATCTGTTATAGAAATGGGGTTTCACTATGTTGCCCAGGCTGGTCTCAAACTGCTGGCCTCAAGCAACCCTCCCCCACTTGGCCTCCCAAAGTGCTGGAATTATAGCTATTTCTGCTATTCAATGCCAATTTTTCCTCTCAGGTCCTCCTTCCCCCATTGCTATGGGTCTTTTTTGTCAATCCCTTACCCTATGCAGGTCCTTTGTGCCCCATATCTCTGGGTATCTGCCTCTCTGCTTTGAACTCCATGTTTCTACCTCTTCTTTCTGCTAGGATTTGACTCCTCCCCATCAGCTACCCTGCCATAGCTCACCCGCTGCTTGGAAGATCAGGGGTTCCCGGGAAACCCTGACTGGGGGAACCGTGAGTGTTCACTGTGGTTAGACTGGAGAAAACTTTTGGTGGCTCAGTTTGGGAGTCAACGGGACCTTAGAGAGAGGCAACTGTGCAGGAAGAGCAGCAGGTTTGCACTTGGGGTGTAGCGCAGAAGTGGGGACTGCACACATGCCTCATGGCAACCCCAGGGCCCCAGGCCCACCTCTCGGATTGGCATCGTACACATACTACATGCTAAGAGCTACCAGACAGGTGTGAGAACTCTGGATTCTTGAGTTCTTTTCTCAGCCTTACTGGGAAAGGATCAGGCCCATATGAGTTTATGAAGAACCCAATCCTCAAAACTGTTCTTCTAGCCCTTTCATACCCATATAACTGTATAGGGGTAGATTTTGAGGGCATCTTTTTTGGTGGGATTCCCAGCAATGAATGACCGTCTATGCCAGCCAGGGATGCTATAGGGCATTTCCTCCTTGGATGCCTCACCCAGGGAGAGGCACCATCAGGAACCATGAGTTCCTGAGAGGTAAAGATCTTGAGAGTGGTTTGGCCTGGTAGCAGCAGCATGGTGGGCATTAAGAAGATACCTTTGCCTTTCTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTAGCCTAGGCTGGAGTGCAGTGGCACCTTCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTCTGCCTCAGCCTCCCGAATAGCTGGGATTACAGGCGCCTGCCACCACACCCAGATAATTTTTTTATATTTTTAGTAGAGATGGGGTTTCACCATCTTGGCCAGGCTGGTTTTGAACTCCTGATCTAGTGATCCACCCACCTTAGCTTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCTAGAAGATACCCTTGCATTTCTAAAAGACTCCCATATACTACATCCATGTCTTCCTTCATTCACAGTGCTAGAAGGACTACATGTTAGGGGACACTGAGGCATGAAGCAGTGTGGCTGTGGGCCAGTATCTTAGTTACCCCATTCCTTGCCTTGGAAGGGCATGACGACTTTGGGCTCTTACAGCCCTCTCAAAGGGGTACCAGCTGGCACCACAAAGCAGGAGGTGCTCACTGCCTGCTTGAAAGGCATTCTTGTCTCAGCCACAGTTTGGGCTTGGCGGCAGCCCTGTTCCCTCTCAATGTCCCAGTGTCTCCACCATCACTTCCTCTTGCTCTCCAGCCGGAGTCTCTGCCAAGAGATTCCTTAGCAGGGACATGAGGATTGGACCTCAGGGAGACAAGACCACTGCCTTAGTCAGGAGCTGAAGCAGCGACAGGAAATGGAATATCGGGTATGGGATGAAGCTGGGAAAATCTGTCATGGGAGCAAATATAGTCCCCTAATACTTTGACCTTCTCCCTACACTGCACTTTGAGCCTCATCTTTCCTCTCCAAGGCCCTGCCCATGGCCTCGATCTGCTCCAAACCTACTTCCAAGGGTCAGGATCCCCAATTCTCACTTCACCTAGCTGCTGTCTCTATCCCCAGTTCTTCTCACAGCCATTTAAAAAGAGCCCCTGGTGTGTGCCTGTAGTCCTAACTACTCTGGAGGCTGAGGGTGGAGGATCGCTTGGAGCCCAGAAAGAAGTTTGAGGCTACAGTGAGCTGTGATGGTGCTACTGCACTCCATCCAGCTTGGGAGACAGAGTGAGACCCTGTCTCTAAAAATATTTTTTTGGCTGGGTGCGGTGGCTCACACCTGTAATCTCAACACTTTGGGAGGTTGAGGTCAGGAGTTTTGGGTCACTTGAGGTCATCAGTTCAAGACCAGCCTGGCCAACATGGTGAAACTGCGTCTGTACTAAAAATACAAAATAGCTCAATGTGGTGGCGTGCGGCTGTAATCCCAGCTATGTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAAAGTTTGCAGTGAGCCGAGATTGGGCCACTGCATTCCAGCCTGGGTGACAGAACAAGACTTTGTCTCAAAAAATAATTTTTTTTTTAAATAAAAAGAAAAGGCCGGGCGCAGTGGCTCATGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGTCTGGTCAACATGGCAAAACCCTGTTTCTACTAAAAATACAAAAAAATTAGCCAGGTGTGGTGGTGGGTGCCTGTAATCCCAACTCCTCCGGAGGCTGAGGCAGGGGAATCTCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGGTCACACCATTGCACTCCAACCTGGGCGACAACAGCGAGACTCCATCTCAAAAAAAAAGAAAAAGAACCTCCTGTTCCTTGGAGGCCCCTAGTACACCCCTAGCAACTCCAGAATGAGCTCTGCTTCCTGCCTTCTGGGTTGGGATACTGAGCTGCAGTCTTGGGCCTCTGTTCTTCTTCCCACGACTCCATGAGTCTGCCCTGAGGTCCAGCCCTCACTGGCTAACCTCTTTTACCTGTAATTCTCCACCCTCTTCAACTCTTCCCTGACCCCTCTGTTCTGTTGTGGATGTCTCTAGGTCTCAGTCCTAAAGTGTTGCCCTTCATTTTGTACCTCTCCTCCCCTCTCCCTAAGCAGTGCGTCCCTCTTTCCACAG
Seq C2 exon
GAGGAAGTTCACTATGGCTCCAGTCCCCTGGCCATGCTGACGGCAGCGTGCAGCAAATTTGGTGGCTCTAGCCCTCTGCGGGACTCAACAACTCTGGGCAAAGCAGGCACAAAGAAGCCGTACTCTGTGGGCAGTGACCTTTCAGCCTCCAAAACCATGGGGGATGCTTATCCAGCCCCCTTTACAAGCACTAATGGGCTCCTTTCACCTGCAGGCAGTCCTCCAGCACCCACCTCAGGCTATGCTAATGATTACCCTCCCTTTTCCCACTCATTCCCTGGGCCCACAGGCACCCAGGACCCTGGGCTACTAGTGCCCAAGGGGCACAGCTCTTCTGACTGTCTGCCCAGTGTCTACACCTCTCTGGACATGACACACCCCTATGGCTCCTGGTACAAGGCAGGCATCCATGCAGGCATTTCACCAGGCCCAGGCAACACTCCTACTCCATGGTGGGATATGCACCCTGGAGGCAACTGGCTAGGTGGTGGGCAGGGCCAGGGTGATGGGCTGCAAGGGACACTGCCCACAGGTCCAGCTCAGCCTCCACTGAACCCCCAGCTGCCCACCTACCCATCTGACTTTGCTCCCCTTAATCCAGCCCCCTACCCAGCTCCCCACCTCTTGCAACCAGGGCCCCAGCATGTCTTGCCCCAAGATGTCTATAAACCCAAGGCAGTGGGAAATAGTGGGCAGCTAGAAGGGAGTGGTGGAGCCAAACCCCCACGGGGTGCAAGCACTGGGGGTAGTGGTGGATATGGGGGCAGTGGGGCAGGGCGCTCCTCCTGCGACTGCCCTAATTGCCAGGAGCTAGAGCGGCTGGGAGCAGCAGCGGCTGGGCTGCGGAAGAAGCCCATCCACAGCTGCCACATCCCTGGCTGCGGCAAGGTGTATGGCAAGGCTTCGCACCTGAAGGCCCACTTGCGCTGGCACACAGGCGAGAGGCCCTTCGTCTGCAACTGGCTCTTCTGCGGCAAGAGGTTCACTCGTTCGGATGAGCTGGAGCGTCATGTGCGCACTCACACCCGGGAGAAGAAGTTCACCTGCCTGCTCTGCTCCAAGCGCTTTACCCGAAGCGACCACCTGAGCAAACACCAGCGCACCCATGGAGAACCAGGCCCGGGTCCCCCTCCCAGTGGCCCCAAGGAGCTGGGGGAGGGCCGCAGCACGGGGGAAGAGGAGGCCAGTCAGACGCCCCGACCTTCTGCCTCGCCAGCAACCCCAGAGAAAGCCCCTGGAGGCAGCCCTGAGCAGAGCAACTTGCTGGAGATCTGAGCCGGGTGGAAGGTCTCCCACCCCAGGGCTGCCCTGACAGTCTCTCTTGGCTCTCTAGACCACTGCTTGCCAATCACTCTCTTTACCCCATGCATGCCATCCTTCGGGGCTCTCTCCCTCTGTCTCCCTCCTGGCCATTCTGGGCTTGGGTATCTCCTTGCATGCCTCCTCAGCTCACCTTCTCTCTTCACCATGAGACTGGCTTTCCACAAACTCTCATCTCAGGCCCTCCCCTTGTGCCTGATACCTGCACTCCGGCTTCCTAGACTCTGGCCCTGCCACACCAACACACTTTCTATTTGGGCTCCCAACACTATTTCTCCATCTCACTCCTTGACATGTACCCCTTTCTGCTTCTCAAGCTTATTTCCTGCTGTCCCTCAGCCTCCAGGCTTCAGTCTTCCCAACTTCTTACACCATTGCTTTCCATTCTCCAGAACTCTTTTTTCCTTTTTACAAACACAATGATAATGATAATTTATTGCCCCCTGGTGGCCTCTTCATCAGGGGTATTGGGGTTAGTGACCTGGCCAGAGGGTGCCAAGAGGGGGGCAGACCAGTGGGGATCTGATCCCAAAGATGGGGTGACCCCAGGGTCAGGGAGGCTGCCCCCAGGCCTGTATATTTAACCCCTATGTACCAGGAGTAATGAATAGTAATAATTCTATTTATGTAAGTTATGATGACGGGTCAGGTAGAGTGAGCTGGGGAGGGAAGTGGATCCATTTCTGCTAAGGAAATTCTAGTCAAATGCATCTCTGTATAGACAAAATGTTAGTGGAGAAGATCTTGTTAATAGAATGTCTATCATCAGAATCTCAGTTGATAGGGTTTCTCTTGTAATGAAGTCTCTACAAATTGGGTTAGCTACATCTCTGCTAAACAGTTGATGGGGTATCTCTTGATTAGGGGGATCCCTAATATCCCCAGCCCCAGCCAGAAGCTGTGAAACCTCAAGTCCTATGGAGGGGAGAAGGACTGGAATGTACCCCATCTCCCTTGACTGCAGAGCAGGTTCCTCCACTGCCCCACCCCTTAGACACCATGACCCCATCAGGTTAATCCCCTGTTGCCATGGTTATGGAGAGCTTGCAGCTGCCATCTTAGATGTGCTCTTTGGGGAAGCCCATCTAACAGGAGGACATTGGTTTGGGGGTGCACCTCCTGAAGAATGGGTGGGGAAGGCTTTCTCTAGGATCAGATTCAAATAAGTATGTATTGAGTGCCTACTCTGTGCAAGGCACTATGCTAGATCTGGTGCCTAGAAGCCCTGAGAAAGAACTTAAAGAGCTAGGAGGACAGAGGCCCCCAAGCTGATCTGGTGGTGCATCCACGCACCCCCACCCTGGGACTTTGGATGCTCCCATCTCCACCTCCAGTGACTTTTAAAGCCGCTTCGTGCCTTTCCTGTAACGTTGGATCCTCCTTTTCTGTCCCCTGCTGTCTCAAGGCCCCAAGTTAAAGGGTTAAAGCCGCTGGAGCTTGGGGAGAGAACATTGTGGAATGGAAGGGATCATGCCCTTTGTGGAGTCTTTTTTTTTTAATTTAATAAATAAAAGTTGGATTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170374:ENST00000536324:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.618
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains