MmuINT0150764 @ mm10
Intron Retention
Gene
ENSMUSG00000060284 | Sp7
Description
Sp7 transcription factor 7 [Source:MGI Symbol;Acc:MGI:2153568]
Coordinates
chr15:102356609-102366325:-
Coord C1 exon
chr15:102366214-102366325
Coord A exon
chr15:102359403-102366213
Coord C2 exon
chr15:102356609-102359402
Length
6811 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
CCCCCCCCCTCTCTCTACAGGAA
3' ss Score
14.77
Exon sequences
Seq C1 exon
ATTCTCCCTCCCTCTCCCTTCTCCCTCTCCCACTGGCTCCTCGGTTCTCTCCATCTGCCTGACTCCTTGGGACCCGGTCCCCAGCTCGAGGATGGCGTCCTCTCTGCTTGAG
Seq A exon
GTAACTGTTCCCTTCCTTAAGAAACCAGCTACAATCTTCCTGGTCCTAATCCATGCCTACCCCACCCCCTCGGCTCACATCGACAGGAGCTGCAATGCTAGTCACTTCCAGGGTCCTCCTCATGAAGAGGAGTAGGGTCCTGGGAGGGGCAAGCAGAGGGTACAAGCAAGGAAGGGGAACATAGCCAGGGGTCAGAGGGCAGTCAAAGAAGAAAGCCAGGACCACGAAGGTCAGCTAAGCCACTGGCTGTGGGAAGTGAAAAGGCATTGGAGACAGGAAGGAGAAGAGATGGGCAGGGAAAACAGGTAGGCTGACAGCGGATGGTGTCTGAGTGAGGACGGAGAAGACTTCAGCTACTATTCTTTGGGTTGGGGGTGTACCATGTCTAGGGCTCCCACATTAAGCAAGATCTGGTCAGGTCTGTGTTGAGGAAAGAGCCTGGTCTGTTAGCTGGTGTGTGGGAGAGGAGGAGGGCAGTCCTGCATGTGGGGGGCTGGCCAGGGGAACTGAGCCCAGGACTGAGGGGGAAGCAAGGAGGAGGGACAGGGTCTGAGGCCGCTTGCCCGGCTCACAAATATTTAGCTTTCAGCCAAAGACAAACTAAACTCTATTTTGGGAGTGGGAGGCTCCAGGGAGGACTGGGCCACTTCCCCTCCAGGCTGGGACCCCAGCAGCTTTCCCTTGCCTCCCTGTTTCTGAAGATGAAATAACCAGGGTACCGTGTGAGTTTGGGGTCTTAGAAGCCATGTACTTTGTCGGGGCTCCTGGGGGACCCAAGGCACAGAGTTGGAAGGAAGGACTCAAGCCACTCAGAGCCTGAGTTCTTCCACGTCTCATAATGTTTCCGTGTCACCATCTCTAGGCTGCCTTCAGGGTATCTCTGAAGGAATCAGGGGTGAGATGATACCCCTTGGATGTCAGTGCCCTCCGGTAGCCTCAAATTGTCCCTATTCTTGGGGCCTTATCTCAGTCCAGTGTAGCGGCACAAATCTTTAATCCCAACACTTGGGAGGCAGAGCAGAAGCAGGTGAGCTTGAGGCCAGCCTGATCTACATAGAGAATTCCAGGATAGCCAGAGCTACATTGAGAAACCCGGTCTCAAAAACAAACCAACAAAATCTCTGTTCTGGGTGCCCTCACTCAGGTCCCAGGAGTGACTAGTCTTTGCTGATTGACTCATCAGAAAGCTGACTAGTTCAACCTGAAGGAGAGAGTGTGTGTGTATGTGTACCTGCATGTACATATGCACAAGAGCGCATGCACACACACAAGCTGGATCATCTTAGTACTTAGTCCAGATGAGAAATGGTGTCTGTAAGGCTATGAGATAAGGACTTGATGACTGAGTTTGAGGAAGTGCCATACAAGCCAGTGGGTGGACATGCTCTATAACCAGATAACCCAGGAATATTGATCTACTTTCAGCTGCATTGTTTGCAGATTGTTATCATGCCCCTTTCCCCATCAGACTCTAAATTTATTTATTATTATGTAAATGTATGACCATGGGCACATGTGTGCCACTGCTCCTGTGTGTGGGCCAGAGGAAAACGTTTGGGAATCAGTTTTCTAATTCCACCTTGGATTCTGGGAATTAAATTCAAGTGGGCAGACTTTCCTGGGAAGCTGCTGAACCTTTATCATCATCATCATTACTATTACTGTTGTTATTATTATTAATTATTTTTACTCAACAGACTATGTTGCGCTATCATTAAACAATAGTTTTGAGGAAGCAGGAGGAGAGAGGTGCATATAAGTCTTGGGTCTGCCCAGGGCAGTAATGGTGTCAATGATATGGACAGCATGCCTGCCCTGCCAGCGTGGCACTCGTGCCTGGGGGAGGGGCAGTTCAGAGACTTTCTGGAAAGACACAGGCTTGGGGAAGCATTTGGCAATGGGATGTATCATGGATGCTAGGTTTTCAGGTTCCTCTACTCCCTGTGGTCCACCAACATAAAGACACCCCACTCTCTCCATTTCTTTCCTTTTTCCTTCCTTTTAATCATTTATTATCTATTTATGTATGTATTTATTTATTTATTTATTTTGAGACAGGGTCTTTCTTTATAGCCCTGTCTGTCCTGGAACTTACTATGTAGACAAGGCTGGCTTCAAACTCAGAGATCTGCCTAGCTCTGTCTCCCCAGTGCTGGGTTACCCGGCAGTGTCTGTTTCTTTTACCTAGTTTTTAGGGTCCTGGGTACTTTATCTCCTCCCCAATGCCTTGTGAATCTCTCTACCTGCTATGAGTAGGTTCTCCAGCAGTGGGAGGAGCTTGAGATTCAGAGGACAGCAGCTGTTGGTGGTAAGGGGATCAGGGAAGAGGGAGAGATGGGGAGAAAAGGACACTAGGCAAGAAACTGATAAGCCCCCAGTGCTCAGTGCTAGGGTGGTTGCTCAGCAGGGAAGGGACCTGGGCTCAATTCCTAGCATGCTAAAAGATACGCATGATATGATAAAAGAAACTAATTTAAAACAAACTGCAAAGCTGGGTGAGTGAAGAAAGTGGGGAGAAAGCTGGGAGCTAGGAACAGGGACTTTGGGTGTTCAACTTATGTAGTGGCAGTCCCATCTCCCTCCCTCTCTCCCTCCCTTCCTTCCTTCCATCTAGCCTCTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTTGCGCTGTAGACCAGGCTAGCCTCAAACTCAGAGAGCTGCCTGCCTCTGCCTCCTGAGCACTGGCATTAAAGGCCTGCGCCAGTACTGCCCAGCTCAGCTATTTTCATTTTTTGAGACAAGGTCTCGCTATGTCTGTCCTGGAACTCCGGAATAGAGTTAGGGTTAGACTATTTGGACTAGGCAGGCCTCAAGCTCACAGAGATCTGTCCTTCTGCTTCTGAGTGATGGAATTTCGGGCAGGAATCACCATGCTGGTCTAAGCCTATTATTTTAAAGGGTGGTGGAACAAGAATAGGGACTGGGAAACGGGAAAGTGGGTATCCTGGGTACTACAAGGTAATACATATGATCAGGTATAGGCAGGAGCGCATGCTCAGAACCCTGGACCCTATTCCTCAGTTCTCACAGAGAGAGCAATCAGCCAGAAAAGGAAACTGAGGGTATGAAGGAACTTAACCTCCAGTGCTTGGCTCCCGGAGTTGTCCAGTACTTTGGTTTTTCTTTCTGGCCTCCAGGGGCCGTGTTGGCCTTGCTCCCCAAAGTCGGGGTCTCATGTCAGTCTAGGGTTGGCTGTCTTCTTTCACCCCTCCCTCCCTCCCCACAGCTGGGTGGGGTCCCTGGGCTTGGCTGAGGCCCTTGTGGCCACAGTGTGAGGGCCGGGCAGGCGGGGGACCGCGTCGGCGTTTTTAAAAATAAACCGACCGCAGGGAAGCCACCGGAGCTGGAGCTGAGCAGGGCCATGCTGGGCAGAGGGGGAGGGGGCAGCAGCTAAGGGGAGAAGGAGGGAGGAGTGGCCTGGTCTGGTCCGGGGGTTTTCTGGGGCCCTTTGCCATGGTGGGTTTCTCTTGGGTGGGAACGCTACGCAGTCCTCCTCCTCCTCCTCCCTCTTTCTTCACCTCCTGTGTTTTCCTTAGCTTTTCTGGCCCAGGATCTCATACCACCTCTCCTTTGTTTATTCTGCTTTCCTTGCTCTCCCTCCCTTTTGTTTTTTAACTTTCCTGTCCATTTCTGCCTCTTCATGCAAGCTTCTCTCCCTTAGGGTCCCTCTTGCTCTGTTCTGCGGAGCTTTGCATGCCAGTTCCTCCTCGGGCACAGCGGACTCTGTGCCCCATGGTTTTGGATCTCTTGTGTCTTTGAACCCCCATGTTGCTACCTCTCCTTCATGCTAAGTTCGATTCCTGCCTCCCCCCGCCCCCCAGCTCTCCCTTGGCTTGGACCATTAGAGGGTCCAGGGAAAGCCTTACTGGGAAAGCTCAGGGGTTGGACAAGGTTTTGGTGGCTCTTACTGGGAGCCCATAGGATTGGCAGGATATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGCAGAGAATTGGGCAGGAGTGTAGTATAGTGATTACACATACCTTCACTGGAACCTTGAGACACCAGTGTCACCTCTAAGACTTGGCATCACATATCTGAGAGCCCTGGATTCTCTTCTCCTTCATATGTTTTTACCAGACAATTATATAATTGACTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTTCTTTCTGACACAGGGTTTCCCTGTAGCTCTGGCTGTCCTAGAACTCGCTGTATAGACCAGGCTGGCCTTGAACTCAGAGATCTGCCTGCCTCTGCTTCCCCAGTGCTGTGCTCAAAGGTGTGCACACCTTTTTTGTTTTTATTTTATGTATGTGGGTGTTTAGCCTACATGCATGTGCGTACATCATGTGTGCTCCTAGTGTGGTCTGTGGATCCAGAAGAGGGAGTAGGATCACTTGGAACTGGAGTGACACATGGCTTTGAGCTGCCACATGGGTGCTGGGAATCTAAACCCAGCTCTCTGGAAGAACAGTAAGTGCTCTTAACTGCCAAGCCATCGCTCAAGCCCCAATGGTTAGCTTTTAAAAGATGTTTAGGGGGGCTGGAGAAATGGCTCAGCAGTTAAGAGCACTGACTGCTCTGCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCTCTCTTCTAGTGTGTGTCTGAAGACAGCTGCAGTGTACTCATATAAATAAAAAAATAAATCTTTAAAATAAAAAAGATGTTTGGTAAACACACATACACACATAGAGGGAGAGGAAGGGGGGAGAGAGAGAGAGAAAGAGAAAGAGAGGAGAGAAGAGAGAAGAAGTGTGTATGGTAAGGGTACATTTCTGTGAACGCCATGTCAAAGCATCTGAAGAAGTCTGAGGACAACTTCTTTGTGGGAGTTCTCTCCTTCTAGCACGTGGGTTGTGGGGTTGACTTCAGGTCACCAGGTTTAGTGGCAAATGCCTTTACCCATCAGGCCTTCTCGCTGGTCCCACAAAATCAAGCTTTTGAAGGATGTCTTATTCTTTCTCTTTTTTTTTATAAGTCAATTTGGTTGAACCCCAGGACCTTGTACATACTAGCCAAGGATGCTGGAGTGTATTTCTTCACAAGAGGTTCTGATTCTAACCTACAGGGGGTACCAGGAGGTCCTGAGGGTGGTCAGATTGGTCATGGCAGTTTGGTAGGCACTAAGGAGCTATTTCTTTCTTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATGAGACAATGTTTCTCTGTTGAGGCCTGGCTGTCTTAGAACTTGCTCTGTAGTCTAGGCTGACCTTGAACTCATAGAGATCTGCCTGCCTCTGCTTCCGGAGTGCTGGGACTAAAGATGTGTGCCACCCCTGCCTATCTACCTCTGTGTTTCTAGCCCCTCTACCCCCAGCCCATTTTCATGTTTTTCTCCGTCCACAGGACTGAGTGGGATGGGAAGGTGCAGATCGACCCCATGCACTACGCCTTGGGAACACTGAAGCTGTGTCCAGGGTCTTAACCAGCTCCCCGTCGCGGGGAGTCCCGAGGACTCTGTATTCTTTCACTGCTCAAAGGGACGCTAGCTGGTGGTGCCCAGTGCCTGCTTAAAAGGCATTCTTGCCTCACCACAACCCCCGGCTTGGCTGAGGCCCTGTTCCCTCTCAATGTCTCAGTGTCTTCTGCTGTCCCTTCCTTGAGCTTCCCGGATTCAGAGTGCATGCCAAGAGATCCCTCATTAGGGACATGTAGACTTGACCTCAGGGAGATGAGAAGACAGCGGCTCCTTAGTCAGGAGCTGAAACAGAGACAGGGAATAGAATTGAGGTGAAGACAGGAAAATCTGGAATGAGGCCGGACATTGTCCCCAGCACCACTTCTCTTTGTGTCCCACACCACTTTCTGTGGAGAAGGTGTGGAAGATGGTGTCTTTGCTGTGCTCACCAAGCTGGTCTCAAAGACTCCTGGGCTCAGCCTGCAGAGAAGCTAGGCTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGAGTCAGGGTCTCTCTACATAGCTCTGGCAGTTCTGGAACTTACCATGTAGGCCAGGCTGGCCTTGAACTCCTGCCATCACACCAAGCCTGCTTTGTGTTTGGAATTTGTGATGTAGCTGAGGATGACCTGAGGTTCTGATCTTCTTTGCCTCTGTCTCCCGAGAGCTAGGGTTATAGGTGTATGCTACAATACATCCAGGCTATAATCCTCTTGGAGTCCCTGGTCGTAGCTGGGTTTCTGTCTGCTTCAGATCCACTTTCCTAGGTCAGGACCTTTAATCTCACCTCAGCCAGCTGGCTGCTTCTTTTATGTCAGCTCTTCCTCAGAGACACTTGTACACCCCTGTTGATTCCACAGGAGGCTCTTCTTCCTGTCGGCTGTACTTGCCAGGCCTCACTGGCATACCAGTCTTGCCTCTATACCCTCTCCTCTCTGCCTCTCCCTAACCTCTGTGCTGGTCTCAGACCTATAGCTATGCCCTTCACTCTATCCTCTCTTCCTCCCTCCTAAGCAGTGCCTCTCTCTCCCCCCCCCCCCCTCTCTCTACAG
Seq C2 exon
GAAGAAGCTCACTATGGCTCCAGTCCCCTGGCCATGCTGACTGCAGCCTGCAGCAAATTTGGCGGCTCTAGCCCTCTGCGGGACTCAACAACCCTGGGGAAAGGAGGCACAAAGAAGCCATACGCTGACCTTTCAGCCCCCAAAACCATGGGGGACGCCTACCCAGCTCCCTTCTCAAGCACCAATGGACTCCTCTCTCCTGCAGGCAGTCCTCCGGCCCCAGCCTCTGGCTATGCAAATGACTACCCACCCTTCCCTCACTCATTTCCTGGGCCCACCGGTGCCCAAGACCCTGGGCTCCTAGTGCCTAAGGGGCACAGCTCGTCTGACTGCCTGCCTAGTGTCTACACTTCCCTGGATATGACTCATCCCTATGGCTCGTGGTACAAGGCAGGCATCCACGCAGGCATCTCACCAGGTCCAGGCAACACACCTACTCCTTGGTGGGACATGCACCCTGGGGGCAACTGGCTAGGTGGTGGTCAGGGCCAGGGTGATGGGCTGCAAGGGACACTGTCCACAGGCCCTGCCCAGCCTCCACTGAACCCCCAGCTGCCTACTTACCCATCTGACTTTGCTCCCCTTAACCCAGCTCCCTACCCAGCGCCCCACCTCTTGCAACCAGGGCCCCAGCATGTCCTACCCCAAGATGTCTATAAGCCCAAGGCGGTTGGCAATAGTGGGCAACTGGAGGGGAGTGGTGCAGCCAAACCCCCTCGGGGTGCTGGCACAGGGGGCAGCGGTGGATATGCGGGCAGTGGGGCAGGGCGTTCTACCTGCGACTGCCCCAACTGTCAGGAGCTAGAGCGGCTCGGGGCAGCAGCGGCTGGGCTGAGGAAGAAGCCCATTCACAGCTGCCACATCCCTGGGTGCGGCAAGGTGTACGGCAAGGCTTCGCATCTGAAAGCCCACTTGCGCTGGCACACTGGCGAGAGGCCTTTCGTCTGCAACTGGCTTTTCTGCGGCAAGAGGTTCACTCGCTCTGACGAGCTGGAGCGCCACGTGCGCACTCACACCCGGGAGAAGAAGTTCACCTGCCTGCTCTGTTCCAAGCGCTTTACCAGAAGCGACCACTTGAGCAAACATCAGCGCACCCACGGGGAGCCAGGCCCGGGACCGCCCCCAAGTGGCCCTAAGGAGCTGGGGGAGGGTCGCAGCGTCGGGGAAGAAGAAGCCAATCAGCCGCCCCGATCTTCCACTTCGCCTGCACCCCCAGAAAAAGCCCACGGAGGCAGCCCAGAGCAGAGCAACCTGCTAGAGATCTGAGCTGGGTAGAGGAAGGTCTCCAGCTCCAGGGTCCTCTTGCCAGGCTCTCTTGGCGCGGTGGACCCATTGGTTGCCCCTCGCTCTCTCCTATTGCATGCTATACTCTGGGGGCTCTCTCTGTTCCCCTAGGTTATCTCCTTGCATGTCTCCTCAGTTCTTCTCTCTTTGTCAAGAGTCTTAGCCAAACTCCTCTCAGGCCTTTGCCAGTGCCTAGTTCCTATGCTCCGACCTCCTCAACTTTTTCTTCTCTGCCCCTGTTCTTCACAGCTTCCATCTGGCCTCACATCATTTTCTCATTAACTCGTTGCCATCTAATCTTTCTGCTTCCCAATCCTATTTGCCGTTTTCCCGAAGCTTCCAGGCTGTCGCCTCGATTCCCCCTGAGCTTTGTGTTTTCTTTTTTTAAACAAACACGATGATGATGATGATGATGATGATAATTTATTGCCCCCTGGTGTTCTTCATTAGGAACCAGAGTTAAGGAGATTGGTGTTAGTAACCTGGCCGGGAGCAGAGTGCCAAGAAGGGGGAAGTCCAATGGGGATCTGATCCCAAAGATGGGGTGACCCCAGGGTCAGGGAGGCTGCCCCCAGCCTTGAGTACTTAACCCCTATGCGCCAGGAGTAAAGAATAGTAATAGTAATAATAATAATAATTCTATTTATCTAAGTTATGATGACGGGTCAGGTACAGTGAGCTGGAGAGGGAAAGGGATTCTCCCCGCCCCCAAGGAAATTCTAGTCAAATGCATCTCTGTATAGACAAATGATAGTGGAGACCTTGCTCGTAGATTTCTATCCTCGAGGTCTCCGAGAGTTTCTTTTTCAGTTGAGTTTTGGGTTGTTCGGCCTCTTTTAGAGTTTCTGTGGGTGTCTCTCTGTTAGGCAGTCACTAAGATCCCCAGCCCCAGCCAGAAAGCTGTGAAACTTCAAGTCCTATGGCGGGGAGGACTGGAATGTACCCCAGTCCTCTCGACCCGACTGCAGATCAGGTTCCTCCCCTGATCCTCTTCTCATACCCTGTGACCTCACCAGGTTATCCCCTTGTCGTCATGGTTACAGAGAGCTTGCAGCTGCCATCTTAAACGTGCTCTTTGGGGGAGAGCCCACCTAACAGGAGGATTTTGGTTTGGAGGTGCCCCTCCTGAAAAAGTAGGTGGGCAAAGGCTTTCTCTGGGATCAAATTCAAATAAATCAAGTATTTATTGAATGCTTAATATGTGCAAGGCCTGGTGCCTAGAAGCCACGAGAAAGAATTTATAACAGGACAGAAGTCCCTAAACTAAACATCCACAGGCCCCCAATCTAGGAGGTTTCACTCCATTCCAGTGACTTTTAAAGCCGCTTTGTGCCTTTGAAATGCCTTTCCTGAGATTTTTGGATCTTCCTGTTCTGTCCCCTGCTCCTTCTAGGCCCCAAGATAAAGGGTAAAGCCATGGAGTCTGGGAAGAGCATAACGTCGTTGACGGGATCGTCCCTTTGTGGAATCTTTCTTTTTTTTTTAATTTAATAAATAAAAGTTCGATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060284:ENSMUST00000078508:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.627
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types