RnoINT0141909 @ rn6
Intron Retention
Gene
ENSRNOG00000014082 | Sp7
Description
Sp7 transcription factor [Source:RGD Symbol;Acc:631377]
Coordinates
chr7:143958858-143966863:-
Coord C1 exon
chr7:143966745-143966863
Coord A exon
chr7:143960124-143966744
Coord C2 exon
chr7:143958858-143960123
Length
6621 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
GCCTCTCTCTCTCTCTCCAGGAA
3' ss Score
14.46
Exon sequences
Seq C1 exon
ATTCTCCCATTCTCCCTCCCTCTCCCTTTCCCCTCTCCCACTGGCTCCTGGTTCTCTCCATCTGCCTGACTCCTTGGGACCCGGTCCCCAGCCTGAGGATGGCGTCCTCTCTGCTTGAG
Seq A exon
GTAACTGTTCCCTCCTCTTCCTTAAGAAACCAGCTACAATCTTCCTGGTCCTAATCCATGCCTACTCCACCCCCTCGGCTCACACAGACAGTAGCTGCACTGCTACTCACTTCCAGGGTCCTTCTCACGAAGAGGAGGAGTGGGGTCCTAGAAGGGGCAAGCAGAGGGTACAAGCAAGGAAGAGGAACAGAGACAGGGGTCAGAGGGCAGCAGTCAAAGAAGGAGAAAGCCAAGGCCCCTAAGGTCATGTAAGCCACTGACTTCGGGGAGTGAGAGAAAGGGAAGAGAGGGGATGGGCAGGGAGAACAGGTAAAGTGACAGTGGACGATGTCTGAGTGGGCACAGAGAAGCCTTTAGCTACTGTTCTTTGAGTTAGGGGGAATCCCATGTCTAGGGCTCCTACATCAAGCAGGATCTGGTCAGGTCTGTGTTGAGGAAAGAGCCTGGCCTGTGAGCTGGTGTGTGGGAGAGGAGGAGGGCAGCCCTGCATGTGGGGGGCTGGCCAGGGGAACTGAGCCCAGGACTGAGAGGGAAGCAAGGAGGAGGGACAGGGTCTGAGGCCGCTTGCCCGGCTCACAAATATTTAGCTTTCAGCCAAAGACAAACTAAGCTCTATTTTGGGAGTGGGAGGCTCCAGGGAGGACTGGGCCACTTCCCTTCCAGACTGGGACCCCAGCAGTGTCCCTTGCCTCTTTGGTTCTGAAGATGAAGCGAACCAGGGTACCATGTGAGTTTAGGATCTTGAGAAATTAGGATTAACTTTGTCAGGGCTTCTGGGGTACCCAAGACATAGAGTTAGAAGGGAGGACTCAAGTCACTCAGAGCCTGAGTTCTTCCTCATCTCCCAGTGTTTCTGTGTCACCATCTCTGGGCTGCTTTCAGGGTATCTCTGGAGAAATCTGGGGTGAGATAATACTCCTTGAATGTCAGTGCCCTCCAGGAGCCTCAAATCGTCCCTATTCACGGGGCCTTATCTCAGTCCAATGTAGTGACACAGATCTTTAATCCCAACACTTGGGAGGCAGAAGCAGAAGCAGGTGAGTTCAAGGCCAGCCTAATTCTACATGGAGAGCCCCAAGAAAGCCAGAGCTACACAGAGAAACCCTGTCTCAAGATCAAACCAAACCAACAAAATCTCTGTTCTGGGAACCCTACCTCAGGTCCCAGGAGTGACTTAGCCCTTGCTGATTGACTCATCAGAAAGCTGACTAGTTCAACCTGAAGGAGAGGGTGTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACCCGCCTGCCTCAGCAGGAAGCTTTTGAACTTAAGCATCCACTGGCTTACCTATGTTAGATACATTGTTATACTTGTTGCTGACTTTGCCTGTGTGTGGGACCACAAGAGTGCATGTACACACACAAGCTGGATTGTGTTAGTACTTAGCCCAGATGAGAAATGGTGTCTGTAAGACTATGAGATAAGGACTTTATGACTGAGTTTGAGGTAGTGGCATATGAGCCAGTGGGTGGCCACATTCTGTAAGCAGGTAGCCCAAGTACAGAGATCCACTTTCAGCTGCATCGTGAACAGATTGTTACCATGCCCTTTCCCCCCAACAGACTCTAAATTTATTCCTTATTACTTATATGTATGACCATAGTGGGCACACGTGTGCCGCTGCTTGTGTGTGGAGGGAGGGCAGAGGAGAACGTTTGAGAATCAGTCTTCTAATTCCACCTTGGATTCTGGGAATTAAATTCAAGTGGGCAGGCTTTCCTGGGAGCCTGCCGAACCTTTATCATCGTCATTATTATTATCATTGTTGTTATTATTTTTACTCAACAGACTTTATGTTGAGCCACCATTGAAACAATGGTTTTGAGGAAGCAGGAGGAAAGAGGGGCATATAAGTCCTGGGTTCGCCCTGTCGGTCCATATCCGTGGACACTGCCCCTGCCCTGCCAGCGTGGCATTCTTGCCTGGGGGAGGGGCAGTTCAGAGGCTTTCTGGAAAGACACAGGCTTGGGGAAGCATTTGGCAATAGAATGTGTCACGGATGCTAAACTTTTGGTTCCCCCCTATTCTGTGTGAACAGGAGACTCCCTAACGTAAAGACACCCCGTCTCTCCATTTGTTTTTTCTTTCTTTTTAGTTATTTATTATCTATTCACGTATTTATTTATTTTTTTGAGGCAGGGTCTTCCTTCATAGCCCTGACTGTCCTGGAACTTACTATGTAGACCAGGCTGGCCTCAAACTCACAGAGATCTGTCTAGCTCTGCTTCCCCAGTGCTGGAGTTACCTGGCAGTTTCTGTTCCTCTTACCTAGCTTTTAGGATCCTGGGTGCTTTACCTCCTCCCCAATCCCTCTGCCTGCTACGAGTTGGTTCTTCAGCAGTGGGAGGGGTTAGGGGTTCAGAGAAGGGACTCAGCTGCTGGGGGTAAGACACGTAGCAGGGGATCAGAGAAGAGGGAGAGTTGAGGGAAGGACACTAGGCAATGAACTGGGAAACTCATGCTAGAGACAGATACAGCTCAGTGCTAGTGTGGTCGCTCAGCAGGGAAGGGACCTGGGGTCCAATTCCTAGCCTCTAAAAAATACTCATAATAAGAGAAACTGGTTTTTAAAAACTGCAAAGCTGGGGGAATGAAGAAACTGGGGAGAAAGCTGGGAGCTAGGGACAGGGACCCTTGGTGTTCAACATATGTAGTGGCAGCCCCATCTCCCTCCCTCCCAGCCTCCCAGACAGGGTTTCTTTGTGTAGCCCCTGCTGTCTGGAACTTGCTCTGTAGACCAGTCTAGCCTCAAACTCAGAGATCTGCCTGCCTCTGCCTCCCGAGCAGAGCACTGGGGTTAAAGGTGCAGGTCACCACCTCCCAGCTTGGCCATTTTCAGTTTTTGAGACAAAGTCTCACTATGACTGTCCTGGAACTCTGGGTTAGGGTTAGACTATTTGGACTAGGCAGGCCTCAAACTCACAGAGATCTGCCCTCCTGCCTCTGAGTGATGGGATTGAAGGCATGCACCGCCATGCACCGCTATGCGAGGCTAAGCCCTTTATTTTAAAGGGTGGTAGAATAGGGATAGGGACAGGGAAACTGGAGAGTGGGTGTCCCGGGTACTACAAGGTAATGCATATGGCCAGGTAAGGAGCGCATGCTCAGAACCCTGAATCTTCTCCCTAGGCTCTCGCAGAGCGAGCAATCAGCCCGAAAAGGAGACTGAGGATATGAAGGAACTTCAGCGCTTGGCTCCACGCGCGGTCCAGTACTTTGGTTTTTCTTTCTGGCCTTCAGGGGCCGCGTTGGCCTTGCTCCCCAAAGTCGGGGTCTCATGTCAGCTTAGGGTTGGCTGTCTTCTTTCACCCCTCCCTACCTCCCCACAGCTGGGTGGGGTCCCTGGGCTTGGCTGAGGCCCTTGTGGCCACAGTGTGAGGGCCGGGCAGGCGGGGGACCGCGTCGGCGTTTTTAAAAATAAACCGACCGCAGGGAAGCCACCGGAGCTGGAGCCGAGCAGGGCCATGCTGGGCAGGGGGGGAGGGGGCAGCAACTAAGGGGAGAAGGAGGGAGGAGTGGCCTGGTCCGGGGGTTTTCTGGGGCCCATCGCCATGGTGGGTTTCTCTTGGGTGGGAAGTCTACGCTGTCCTCCCCCTCCCTCTTTCTTCACCTCCTGTGTTTTCCTTAGCTTTTCTGGCCCAGGATCTCTTACCACCTCTCCTTTGTTTATTCTGCTTCCCTCGCTCTCCCTCCCTTTTGTCTTTTAACGTTCCTGTCCATTTCTGCCTCTTAATGCAAACTTCTCCCTTAGGGGCCCGCCTTCTCTGTCCTGCGGAGCTTTCCACAGCAGTTCCTCAGGCACACTGGACTTTGTGTCCCATGGTTTTGTGCCTCATGCGTCTTTGAACTCCCATGTTGCTACCTCTCCTTCATACTAAGTTTGACTCCAGTCCCTATCAGCTCTCTCTTGGCTTGGGTCATTAGCAGATCCAGGGAAAGTCTTACTGGGAAAGCCCAGGGGGTTACTTACTGTTGGACAAGGTTTTGGTGGCTCTTATTGAGAGCCTATAGGATTGGCAGGTCCAGAGAGAGAGAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATATGAATGAATTGGGCAGGAGTGCAGTATAGTGATCACACACACCTTCACTGAAACCTTGAGACACCAGTGTTGGTTACCGCTAAGATTTGGCGTCGTGTATCTGAGAGCCCTGGATTCTCTCCTCCTTCATATGTTTTACTAGGAAGGCACTGGACAATTAGATTTTTCTTTTCTGTAGCTCCAGCTGTCCTAGAACTTGCTGATAGGCTGGTCTTGAACGAATTCAGAGATTTGCCTGCCTCTGCTTCCCCAGTGCTCTGATTAGAGGTGTGTACCACCACGTCTAGCACTTTTTAAAAAAATTTTTATGTGTATGGGTGTTTTGGTCACATGTATGTGTGTGTTCCTGGTGTCTGTGGAGCCAGAAGAGGGAGTAGGATCACTTGGGACTAGAGTGACAGATGACTTTGAGCTACCACATGGGTGCTGGGAATCCAAACCCAGCTCTCTGGAAGAACAGTAAGTGCTCTTAACTTCCAAGCCATCCTTCAAGTCCCAATGGCTAGCTTTTAAAAAATTTTTGGTAAAACACACACACACACACACACACACACACACACACACACACACACACACGGGGCGGGGGGAGGCAGAGAGGGAGAGAGGGAGGGTAGGGTAGGTTTATGGGAATGCCATGCCAAAGCATCTGAAGAAGTCTGAGGACAACTTTGTGGGAGTCTCTCCTTCTAGCATGTGGGTTGTGGGGATTGACTTTAGGTCACCAGGCTTAGCAGCAAATGCCTTTACCCATTGGGCCATCTCGCTGGTCCCATATAGTCCAGCTTTTGAAAGATGCTTCTTGGGTTGGGGACTTAGCTCAGTGGTAGAGCACTTGCCTAGCAAGGGCAAGGCCCTGGGTTTGATCCCCAGCTCGGGGGAAAAAAAAAAAAGAAAAATGCTTCTTATTTTTTTTCTCTTTTTTATAAGTCGATTTGGTTGAACCCAGGATCTCATACATATTAACCAAGGATGCTGAAGTGTATTTCTTCATAAGTGGTTCTGATTCTAACCTAAAGAGGGTACCAGGAGGTCCTGAGGGATGGTTGTCATTGAGGGATGGTGTTATGAGGGGGGTCAGATTGGTCATAGCAGTTTGGTAGGTATTAAGGAGCTCTTTCTTTCTTTCTTTTCTTCTTCCTTCCTTCCTTCCTGAGGCAGGGTTTTTCTGTGTAGTCCTGGCTGTCTTAGAACTTGCTCTGTAGTCTAGACTGACCTTGAACTCATAGAGACCCGCCTGCCTCTGCTTCTGGAGTGCTGGGACTAAAGATGTGTGCGGTCACTGACCAGCTACCTCTGTGTTTCTAACCACCCCCCTCCATCCCACTTTCATGTTTTACTTCATTCACAGCACTTGAATGGTGAGGTGCAGACCAATCCCATGTACTACACCTTGGGGGACACTGAAGCTGTGTCTAGGGTCTTAGCTCCCTGTCTCAGAGCGTCCTGAGGACTTTGTAGTCTCTCACTGCTCAAAGGGACGCTAGCTGGTGATGCCCAGCCACTGCTTAAAAGACATTTCTTGCTTCACCACAACCCAGGCTTGGCTGAGGCCCTGTTCCCTCTCAATGTCCCAGTGTCTCCGCTGTCCCTTCCTCTACCTTCCCGGGTCCAGAGTGCACGCCAAGAGATTCTTCACTAGGGACATGTGGATCTGACCTCAGGGAGATGGGGAGACAGTGGCTCCTTAGTCAGGAGCTGAAACAGAGACCGGAAATAGAATTGAGGTGAAGACAGGAAAATCTGGAATGGGGTAGGATGTCCCAACACCGTTGCTTCTCTCTGTGCCCCCCACACTGCTTTCCCTGGAGAAGGTATGGAAGACGGTGTCCTTGCTGTGCTGACCAAGCTGGTCTCAAAGACTCCTGGGCTCAGCCTGCTGAGGGGCGAGGCTAGTTTGTTTGTTTTTGAGTCAGGGTCTTTCTACATAGCTCCGGCTGTTCTGGAACTTACCATGTAGGCCAGGCTGGCCTTGAACTCCTGCCACCACACCGAGCTTGCTTGTTTTTGAGACAGGGTCTATGTAGCCTGGAATTTGCAGTGTAGCTGAGGGTGACCTGCGGTTCTGATCTTTACTTCTGCCTCCTGAGTGCTAGGATATTATAAATGACTGCCACCTCATTCCAGGCCATACAACTAAAGAGTCCCTGGCTGGGCTTCTGTCTGCTTCATATCCACTCTCCTAGGTCAGGCCCCTAAATCTTACCTCAGCCAGCTGGCTGCTTCCTTTGTTTCAGCTCTTCCTGGGAGACACTTGTACACCCCTGTGGACTCCACTGGAGGCTCTTCTTCCTGTCTGCCGGGCTAGAGCACCAGGCTTGCCGGGCCCCACTGGCAGTCTCGCCTCCAGGTCCCTTTCCTCTTCCTCTCCCAAAACCCTGTGCTGTTCTCCATGTTTGTAGGTCTCAGACTCATAGCTATGCCCTTCCCTCTATCCTCTCTTCCTCCCTCCTAAGCGGTGCCTCTCTCTCTCTCTCCAG
Seq C2 exon
GAAGAAGCTCACTATGGCTCCAGTCCCCTGGCCATGCTGACAGCAGCCTGCAGCAAGTTTGGTGGCTCCAGCCCTCTGCGAGACTCAACAGCCCTGGGAAAAGGAGGCACAAAGAAGCCATACACTGACCTTTCAGCCCCCAAAACCATGGGGGACGCCTACCCAGCTCCCTTCTCAAGCACCAATGGACTCCTCTCCCCTGCAGGCAGTCCCCCGGCCCCGGCCTCTGGCTATGCCAATGACTACCCACCCTTTCCCCACTCATTTCCTGGGCCCACTGGTGCCCAAGACCCGGGGCTGCTGGTGCCGAAGGGGCACAGCTCTTCTGACTGCCTGCCTAGTGTCTACACGTCCTTGGATATGTCCCATCCCTACGGCTCCTGGTACAAGGCGGGCATCCATGCAGGCATCTCACCAGGTCCTGGCAACACTCCTACCCCTTGGTGGGACATGCACCCTGGGGGCAATTGGTTAGGTGGTGGGCAGGGCCAGGGTGATGGGCTGCAAGGGACACTGTCCACAGGCCCTGCCCAGCCTCCACTGAACCCCCAGCTGCCTACTTACCCGTCTGACTTTGCCCCCCTTAACCCAGCTCCCTATCCAGCACCCCACCTCTTGCAACCAGGTCCCCAGCATGTCCTACCCCAAGATGTCTATAAGCCCAAGGCAGTTGGCAATAGTGGGCAACTGGAGGGGAGTGGTGCAGGCAAACCTCCCCGGGGTGCAGGCACAGGGGGCAGTGGTGGATATGCAGGCAGTGGGGCAGGGCGTTCTACCTGCGACTGCCCCAACTGTCAGGAGCTAGAGCGGCTGGGGGCAGCAGCGGCTGGGCTGAGGAAGAAGCCCATTCACAGCTGCCACATCCCCGGCTGCGGCAAGGTGTACGGCAAGGCTTCGCATCTGAAAGCCCACTTGCGCTGGCACACTGGCGAGAGGCCTTTCGTCTGCAACTGGCTTTTCTGTGGCAAGAGGTTCACCCGCTCTGACGAGCTGGAGCGCCACGTGCGCACTCACACCCGGGAGAAGAAGTTCACCTGTCTGCTCTGCTCCAAGCGCTTTACCCGAAGCGACCACTTGAGCAAACATCAGCGCACCCACGGGGAGCCAGGTCCCGGGCCGCCCCCAAGTGGCCCTAAGGAGCTGGGGGAGGGTCGCAGCGTCGGGGAAGAAGAAGCCAATCAGCCGCCCCGATCTTCCACCTCGCCTGCACCCCCAGAAAAAGCCCCTGGAGGCAGCCCAGAGCAGAGCAACCTGCTAGAGATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014082:ENSRNOT00000018828:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.625
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]