BtaINT0139366 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032544 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr14:66345565-66345896:-
Coord C1 exon
chr14:66345803-66345896
Coord A exon
chr14:66345665-66345802
Coord C2 exon
chr14:66345565-66345664
Length
138 bp
Sequences
Splice sites
5' ss Seq
CCGGCCAGC
5' ss Score
-3.15
3' ss Seq
TAATTAAATGTGATTTTTAGGAA
3' ss Score
6.41
Exon sequences
Seq C1 exon
CGAGGGCAGGGCGGATGCGGCCGAACCTCCGGGCGCGCCGCGTGTGCCCGGGGCGGGGCGCGTGGGCAGCTGCCGGTCACGGGCTTGGCCTCCG
Seq A exon
GCCAGCGCGTACACCGGCAGCTGCTCGCAGCCGCGTTAGCCGCGGGTGTAGGACCGCGGTGCCGCCGGAGACCTCAATCTTCTGCTGAACTGTGATTAGCCAATGGATTGTAACCATTTAATTAAATGTGATTTTTAG
Seq C2 exon
GAAGTGGAAGTGCAGCCGATCTAAGTATCTTATATTCAAATAGAGCAGCATGTTACCTCAAAGACGGAAACTGCAGTGGCTGTATTCAGGATTGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032544:ENSBTAT00000046176:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(2.4=3.1)
A:
NA
C2:
PF134141=TPR_11=FE(80.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development