BtaINT0141411 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113443419-113444465:+
Coord C1 exon
chr4:113443419-113443463
Coord A exon
chr4:113443464-113444347
Coord C2 exon
chr4:113444348-113444465
Length
884 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
GTTCCTCACCATCTGTCCAGGAC
3' ss Score
7.37
Exon sequences
Seq C1 exon
NTCTCCTTCCGCGGCCGCGCCGGTTGCCGCTTCATCCTGGTGCAG
Seq A exon
GTGTGCCGCGCGGGCAGACGGCGGGAGCGGAAGCGGGGGGTCGTGCCAGAGTCCTAGGGGCCCTCGTAGGGGTGCTGGTGGGGGTGGGGGAGAGCAGTGACTGTAAGGAAACCGCTGAATAAACGAGACAGCCGTCCGGGGAGACTCTGAGACGGCCCGGCTCCGGCGGGAAGATGGCAGCCGTGCACACCCTCGAGCCTGCCCTCCGGGTTCTCGCCGCCGCCTCAGGTTCCCGTGGAAGTCTCTCTGTCGGCGCCGCCGCAGGCCGGGGGCGCCACGCAGAACCCACCCGCACAGCCCTTTTCTCACAGATGGGACGGCTGGGCTTGTCACACACGCTCCTTCCTGCAAAACGACCCCGGGGGCGGGCGAGGGGCGCAAATAAAGAAGGGTCCGGCTTCGTCCCCAGCCCTCCTCCCCCGGTAAAGTGAGGTGACTTCCCAGGTTCCGACCCGGCACCTTCTTACACACGTGGACACAAACAGGGGCTCCTGCGACGCTCTCATACGTGTGCACCCTTGAGGGCACTCAGAGACGTGAGCATATGTCCCCACAGGGAGGGAGGGGGAGGAGGCATGTTGCCGGAACCTGTGCATGCGCGCGCGCACGCGCGCACACACACACTTCCACATGTGCACGTGCTTACACACACAGTCACACACTTCCACATGTGCACGTGCGAGTCACACATGCCACAGTCACACATCCCAGCCCTTGGTGAGGGTTAAGCCCCTCACCTCATAGAATGTGGCTGGCTGGCAAGCGGTCAGCACAGTTCTGTGGGAGCTGTCCGGGGTGTGGGCTATGGGTGTCCAGTAAAACAGGAGAGGCCCAGGAGGGACCCTCCCGCACCATCCCCACCACGTTCCTCACCATCTGTCCAG
Seq C2 exon
GACTTTGCCAAGCGGCAGCTGCTGATTGTACTGGAACACGGGGACTGTGACGCTGGGAGCTGCCTCCATGCCATCTCTGTCTCCCTGGGGGACACCCTCGTCCAGCTCAGGGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542:ENSBTAT00000043975:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(10.2=100)
A:
NA
C2:
PF0009420=VWD=FE(28.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]