BtaINT0141649 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44450581-44454580:+
Coord C1 exon
chr15:44450581-44450729
Coord A exon
chr15:44450730-44454402
Coord C2 exon
chr15:44454403-44454580
Length
3673 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TCTGTCTGTCTGTCTACCAGTAC
3' ss Score
8.78
Exon sequences
Seq C1 exon
GTATTAGAGCTGCGCCGGCCCACGGACTCCCGGCTGGAGCATGTGGACTTCGAGTGCCTTTTTACCTGCCTCAGTGTGCGTCAGCTCATCCGAATCTTCGCCTCGCTGCTGTTGGAGCGTCGGGTCATTTTTGTGGCAGATAAGCTCAG
Seq A exon
GTAGGGCCCAGCAGGTGAAGTGAAGAAGTGGGGAAGACATATCCGCTAATTAATGCAGCGTGTGTATGGGTCCTAGTATATGCCAGCCACTGCGTTAGTATGTGGAGAGTGTGTGTGTGTGGTGGGGGAGTGCGACTGCGTGTGTGGTGAGAGAAGGATCAAATGGAGAGCACAGGTTAGCAAACATGGTCAGAGAGGATGACTGAGGGAGCAGGGCTTGTGCGCACACAGGGTGGCAGAGATGAGGGCCTGATGGAGGACTTGGCTGGAGGGAAAAAGACAGACGCTGCTTCTTTTGTAGCAGCCAAGATTGTATAGGTGCAAACCTATTTATATAGAGAGAGGTAAGAAAGGAAGGAGACTCCTAGCAGACAGCCACATTTCCCCTGGAGGGGGACGCAAGGCCATCTCTGTGGGGTGCTGCTTTTTAAGAGAGTGATGAGCTCTGGGGAGAGCCATCATGAGAAGGGGTGAGGGCACTGACTAGGGATAGTATGAGGGGTACTGAGCTGTCCAGCGAGTGTCACCTGGAAAAGGCAGTTAAATGGAGTGACCCAGGCGGGCACATGGCGATTTGCTGAGAAGGATGAAGTGAGGGCCTTGAGGGTGCTGGGGAGGACGGTGCTTGTAGGGAGGCTGGCCAGACTAGGAAAGGGCAAAAGAAGTCGAGGGACCGGAGCTGCCACTGAGGCAGGGGAGCTGGTTGAAGAAGAATCAGAAAAGAGCTGAATAAATCACATGTGTTGGCATTTATGGTTTTGGAGGGAGAGGAATTCCAGATGCCAAGATCTGGTTGTGGTCAGGGAGGGGATGGAGGAAATGTCACTGGACATGAGGTGTTCTGGTAGAAGCTGAGTCCTTCTGGGCAGCCAAGGTGGGTTTTTTTTTTTTTTTTTCTTTAAAGATCATCTCAGTCCATTTGGGCTGCTGTAAACAAAATACCACAGGCTAGGTCGCTTATAAACTATGGAAATTTACTTCTCACGTTTCTTGAGGCTGAAAGTCCAGGAGCCAGGTGCCGGCGTGGCCACACTGTGGTCAGGGCTCTCTCCCTCAGTCATAGCCGCTGGCTTCATATTATGTCCTCACATGGCAGAAGGCAGGGGGCGAGGGATCTCTGAGGGGTCTTTTTTGTAAGAGCACTGATCCCATTCATGAGGGCTCCACTCTCATGACCTAAGAACCTCAGATATCACTGGGTGTTTGAGGGGACACAAACATTCAGACCATAGCAAAGAGTATATATAGTGGGTGGGACAGGCAGGGAGAGGATGAGATCTCAGCAACATATTGTGTGTTTTTTTGTCATTACAGAGGGGCAGTAGTTTCTTTAGAGTGGTGGATTAATTTAGTTTTTTAGAGCATTTATTAAGCTATCTGCTATGTGCCATAACATACGCTAGGTGCTGATATGAGGGGCAGAAAACTCTTCCTCCTGGTTTTTCCCCCAAAAAACTTTGTTTTGTGTGTGTGAGGAGGTCATTTAGAAAGTAGGAGAAATGGACTCCCGAATGCTGTCACAGGGTGTTGGGGCAGGAACTTGGGCCCACCCTCAGCCCAGAAGTGAGGAAGAAGAAAAACCAGAGCTTCTGGCTTTTTCAGAGAGAGCCAGGTTTAGAAATGAAGACTACTTCCCCCCACCCTGAACCCCGCTTCCCGCCACAGCTCTGTGTTTCAGTATACCACAGTTATATGTATGTCCGTTAGGCCTTGTGAGGGGACCGAGCCAGCTGCTGGAACTAGCCAGCTATGGAAGCTCCCTGGGGCCCCATCTCTGCCTCTCTGCCATCCGTGCTCACTGTCTGCCAGCAAAGCCCCGGCTGCCCATCTCTGACTGAGGCTCTGGCCTGGTCAGACCTTGATGCCCCTAGCAGAGCAGGCCCGAGGCTTCTTTCCCTGAAGGTTTCACTCCTTCACCAAGGACAGAGCCTCCTCTTTGCGACCCCCCCACCCCACCCCCAGCCTGGCTCCAGCAGGGCTGTGAATACAGTGATTGTTTCCTGTGGCTGCAGCTGCCTCTGAACACATTCCTGGACCGTTCCTGGAGGAAAATACCCCAGGGTCCTGTTCTGGCCTGGCTTGGTGTTCAAGTCCTGCCAATCCTGGGCCTAGAAAAGATGCCCTCCCTGCTCGGGGGCTGCCTCTGCCTGGAGAGGGCAGAGTAGGCAGCCTGGTGAGGCCGCACAGGGCTGGAGTCCAGCCAGCTCTTGTTCCGTTGCTCACATTTTAAGTTGTCCACAAGTCCTTGGTCCCTCTGGCCTAGTTCTGATGTCTGTGCCAGTGGGAGGGTGTGCACACACGCACACACACAAGCTTGCAGTGATCAACCCTAAGGGTTGTACAAGCCTGACTGCCAAGCCCCGGGCCCCATTGGAAGGCGTTGTGGAGATCAGTGTTTCCTTTGACCCTGAGATGGCCCTTTTTTAGATCTTTTTCAGGTGGCTCCCCTTGGGGTTTGGGGAGTGCTGTCCCCAGGGAAAGGGCTCTCAGGGCCAGAATACCTGTGTCTCTGCCTCAGGACCCAGCAGTATTTTAGTTGTCCCTGGGGTTGCCAAAAAACTTGTGAACATCCAGAGGTCCTTCTAGAAAAGAGGGTTTGTTTCTGTCATGGACTGGAACCATGTTCTCTGACTGGTGGTCATTAGTCATGAAAGGATGACAGTCCCTGTTGGAGCCAATCAGGTAGAGCCCAGGGCCTTCATAGCTAGTAGGTGGGACCGATAGATGCAGAGAGACAGGGTGGGAAAGGCAGGCTTGAGAATGACTCTGGGCCACTGTCTCATTTGTGATATGGCCCTGAGGGGCGTGTCCTTGACTCCTCTCCTGACAGGTAGATGGTTCAGGCCAGGTATGTCTCCTGTGGTGACTGGTGACCCATACTAGCCCTCAGCACTCACTTCTATGCCTTCTGGCTAGCCCTGGGGAGATTCTCCTTCTGGCCTCCCATTGGTCGTTCTGCTTGGACAGCCAGCCCTGTGATATGGTGCTGGAGTCCCCTCTAGGCCAAGAGAAGGCTGACCCACTGAGAAGTCTGGCCTTTTTTTGGAGCCTGAGAGGAAAGACAGAAGTGGATGAGAATGGCGCCAGCCTCACTCAGTCAGCCCGCTTTCTCCAGTTAGGGGAGTAGGGAACGGTAGACGTGACTGAACTGGGAGACAGGAAAACTGGCCATGTCCCACGTCTGCCACTTCTGACCGGACTGACCCTGGGTTATCAGTGAGCCCAGCTGTAAAATGTGGACTTGGTAAGATGACCTCTGTAGGACCTTCCAGCTCTCACACACTATGAATTTGTGATCACTCTTGCTCAGCTTACCTTTGTATTCCCTGGCCTGAGCTGATCCTCCCCAACTAGGTCAGGCCAACCTGTGCATTTGGGTGGCCCTTGTGGGAGGTGTGTATGTGTGTGTTCAGGTGTTGCTGTGTACCTTCATGTCTGTTCTAGGTATAGCCACCAAGGAGGGCACCACTGCTGGCCCTGTGGCCCTGAGCAGGGGGGATGTGGGGGCTTCATCAGTCTGCAAGGTCAGACCCAGGCTGAACCTCCTTAGCGTCTTTGTTGCCCTGGGATTAACATGAAAGGAGGTCATGAGCCTAGCCCAGCAGGCACTAACTCCCCTTCCCTGAAGGTGTTGGGCCTGGGCTCAGTGTTTGTCTGTCTGTCTGTCTACCAG
Seq C2 exon
TACCCTGTCCAGCTGCTCCCATGCGGTGGTGGCTTTGCTCTACCCCTTCTCCTGGCAGCACACCTTCATTCCTGTCCTCCCGGCCTCCATGATCGACATCGTCTGCTGTCCCACCCCTTTCCTGGTTGGCCTGCTCTCCAGCTCCCTCCCCAAACTGAAGGAGCTGCCTGTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356:ENSBTAT00000007048:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(26.5=100)
A:
NA
C2:
PF0214116=DENN=FE(31.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development