HsaINT0159816 @ hg19
Intron Retention
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:11350]
Coordinates
chr11:8720760-8724267:-
Coord C1 exon
chr11:8724119-8724267
Coord A exon
chr11:8720938-8724118
Coord C2 exon
chr11:8720760-8720937
Length
3181 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TCTCTCTGTCTGCCCATCAGTAC
3' ss Score
6.51
Exon sequences
Seq C1 exon
GTGTTAGAGCTGCGGCGGCCCATGGACTCAAGGCTGGAGCACGTGGACTTTGAGTGCCTTTTTACCTGCCTCAGTGTGCGCCAGCTCATCCGAATCTTTGCCTCACTGCTGCTGGAGCGCCGGGTCATTTTTGTGGCAGATAAGCTCAG
Seq A exon
GTAGGGCCCAGCCGGGCAAGAAAGCAGAAGGGAGGGGGGAAGGCACACCCACAAGCGAATCAGCAAGTGTTCAGGAGCCTAAGCAGGCGCCGGAGACCAGTGCTGGAGTGGGGCTGTGCGTAGGGAGATGGAAGACTAGGTGGAAAGGTAGCACCCCTGTGTGGGTGAGGGAGCAGGGTTTGGGAGCACACAGATGGCAGGATTGAGAACCCTGTGGAGGGCTTGGCCTGAGGGGAGAGGGAGGGATATTTCTTCCTTTGCAACAGCCAAGACTGTGCAGGTGCCGGGATATGTAAAGGGGAAAGGTTAAGAAATTGAGATTTTTGGTGGATGGTTGCATTTCTTCTGGAGGGGGAGGCAAAGCCATCTCAATGGGATGCTGAGTTTGAGGAAAGAGCTGCTGTGAGGAAGGGGCAAGAGCACTGACCGGGGACAGTGTGAGGAATGCTGAGCCAGCCAGCGAGGGTCCTGTGGAGGGTGTCCCCTGGAGAAGGCAACTGCAGTGGCCCAGGGCTGGGCAATGGGAGGGCTGGGGAGAAGGATGTGATGGGGGCACTGAGGTGCAGAGAGGAGAGTGGGTGAGGAAGGCTGGCCAGCCCACACCGGGAAACAGATGATGTGCAGGGCCTGGAGGTGCCAGGGAAGTCGGGGAGCTGGTTTAGGAGGAGTAAGAAAAGAGCTGGATGGGTCACAGGTCTTGGTCTGAAATGCTGGCATTTATGATTTTAGAGGTAGAGGTGTCGAGAAGGTCTGGTGGTGGCCATGGGAGGGGTGGCAGAAGTGATGGTCACTGGACGTGAGGCAGTTTAGGAAGTAAGAAGTCGGAGCTCTTCTAGACAGCCAAGGTTTAAAAAAGAAAAAAGTTTTATGTCAGTGGTGGTTAGGGGGTGACACAGGCAAGGCACAAGTGATACGGCTCCGATGAGTGCAGGAACACTAGGGTTTTTGGTTCTTATGCTGGTTTAGATAAAACGACACCGACACACGTGGAGTGGTTTTAAGGAGCGGAGAGTTTAATAGGCAAGAAGGGAAGGAGAAAGGCAGAAAGAAGAAAGTACAGAGACAGAGGGAGAGAGGCTCCAAAGCCGAGAGAGGGAACCCCAAGTGTTGTGGATACCAGCCAGTTTGATAAGAAGGCTGGAGGAGGCGGTGTTTGATTTGCATAGGGCTTAGGGGATTGGTTTGACCAGGCATGTCATTCATGTAGCCCCTCCCCCCCCCCCCCCCGGAAGCTGGCCTTCCCATCCTAGCCTTTTAATATGCGAATGTAGGGCGCCTGATGTTCTACACACGTGGGAATATGCGGGGCAGCCATGCTGCTAGGCACCTGTAGGGGCAAGGGCAAGAGGACAACGGTGGGAATTGCCATGTTGGGTGGACCCAATTTCTAATGGTCTTCATTTGCATATCAAAGGTTGCCTGCCTGGCTCTAAGAGCCGGGGCTTTCTTTCCAGACAAGAAACATTTTTGAGCTGCTTTAAAGGAAATGAGGTACAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACAAGGTCAAGAGATCGAGACTCTCCTGGCCAACATGGTGAAACCCTGTATTAGCTGGGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAATCCAGGAGGTGGAGGTTGCAGTGAGCGGAGATTGTGCCACTGCACTCCAGCCTGGGAGTGACACTCTGTCTCAAAATAAATAAATAAATAAAAATTTAAAAATTTTTTTAAAAAAAGGAAACAAAAACTTTTCCTCTCTCCATAAAATAATTTCTTAGTAAGTCCTACAACAACAGGATGGGTTATTGGCAACATGTTACATATTGTTTTGGTCAAAGAATCCATCCCAAGCAGTGGTTTCTCTAGAGTGGTCATTTGGACATTGATTAAGCCACCTTAAATGTCAGGTGCTCACAGGAGGGCAGTGAAGGAAAATCCCCGTTCTGGTTTGTCCTCCAATAAGTCCTGAATCCCTGGGGTATTTCCTTCCGTATGTATGAGGAAGCAGTTGAGAGGAAACCGAGAAATGAACTCCCGATTGCCTTCAGAGGGACAGGAACGCAGGCCCATCCTCAGCCCAGGAGAAGAAAGGAGGAAGAAAAACCAGAGCTGCTGACTTTTCCATAGAGCACCAGGGTTTAGAAAGGAAAACTGCCCCTCACTTGTTCCCATCACAGCCTCAATGCTTCTGTGTCTCACACTTCTAGGTGTTCTGTGGGCCCATCAGGCCCTTGTGAAGAAATCTAGCCCAACAGCTGGAATGAGCTGGGTACAGCAGTTCCAAGAGGCCCCTCCTGTGTACCAGCCATGGTCATTGTCAGCCAACAAAGCCCCTGACTGCCCAGCTTTGGTGCCCTGGCCTGGCCTGACCTTAGTGGCCCCTAAGAGAGCCTGGACCATGAGGTTTCTTTTCCTGAAGGTTCTACCCTCTAATTCAGGGCTGAGCTTCCTCTTTGCCACCCTGCCCCCCCCCAGGCCAGCTCCCGTGGGGCTGTGAATACAGCTATTGTTTCCTGTGGTTGCAGCTGCCTCTGAGCACATTCCAGGACCATTCTGGGAGGGACGATCCCAAGGTCTTGTTCTTGGCCTGGCCGGGTATTCAAGTTCTGCCAATCTGGGGTCTTGGAAAAGATGTCCTTCCTGTTCTGCCTGGGGTCTGCCTCTGGCTGGAGAGGGGAGGGGTAGGTCCAGCCAGCTCATGATCCGTTGCTGATGTTTTAGGTTTTCCACAAGTTCTTTGTCCCTCTTGCCTAGTTCTGATGTGGGGTGGGAGAGGGTACCCACGATCTGCATTCACTGGCCCTAGGGGTTTACAAAACCTACTGCCTCCTCAGCCACGGGCCCACTGATGTGCCCCCCAAACCCGAGACAGCCCTTTTCCAGATCTTTGTCAGATGACTGTCCTGCGGGTTGCTGCATACCTTCCTGGCTGTTTGCAGGTACATTTCCCTAAGAGAGTAGCATTGTTGTCCTTGAGGCGCTACGCAGTGGGAAAGCGGGGACTTTACCAGTCTGCAGGGTCCCTGAACCCCATTAGCATTTTTGTTGCACTGGGAGGTTTACGATCAAAGGCTGTCCTGAGCCTCCAGCGAGCTCTAAGTTCCTGGGCCTGGGCTCAGGTACTCTGTCTCTCTGTCTGCCCATCAG
Seq C2 exon
TACCCTCTCCAGCTGCTCCCACGCGGTGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCACACCTTCATTCCTGTCCTCCCGGCCTCCATGATTGACATCGTCTGCTGTCCCACCCCCTTCCTGGTTGGCCTGCTCTCCAGCTCCCTCCCCAAACTGAAGGAGCTGCCTGTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444-ST5:NM_213618:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(26.5=100)
A:
NA
C2:
PF0214116=DENN=FE(31.9=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)