BtaINT0141653 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44457891-44459039:+
Coord C1 exon
chr15:44457891-44458130
Coord A exon
chr15:44458131-44458952
Coord C2 exon
chr15:44458953-44459039
Length
822 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CTGTTCTTCCTCTTCTGCAGGCC
3' ss Score
11.86
Exon sequences
Seq C1 exon
AATGTAATACCCTCAATGGGCTGGTGTCGGAGGTGTTTATCCGGTTCTTTGTGGAGACTGTTGGGCATTACTCCCTCTTCCTGACACAGAGTGAGAAGGGGGAGAGGGCCTTTCAGCGGGAGGCCTTCCGCAAGTCTGTGGCCTCCAAAAGCATCCGCCGTTTTCTTGAAGTTTTTATGGAGTCTCAGATGTTTGCTGGCTTCATCCAAGACAGGGAGCTGAGAAAGTGTCGGGCAAAGG
Seq A exon
GTAAGGCCAGAAGAGCCTGGGTTGGGGGGTTCTGAGGGGTATCAGGTCTCCTCCTCCGGCTTTTCTGCTACCAGCAGGCTGAGTAGCCAGGCACAGTGAGCCTCCATCAGTATCAGCCAGGGCAGGCCTCCTAATATCCCTTTTCTTCTAAGAGGGACTGCCAAGGGCACTTTATCCTCTGCCCCAGAAAGTGCCTTCACTAGGCTGGGCACAGGCTGGAGCCCTGTGGCAAAAGAGTGGGGCTTATTTCCACTTTGCCCCTCTTCATAGGTCCTTATTTAGAGAAAAAGGCCAGATTGTGCCATTTAGGGAGTCCTGAGAATCCAGGGTTGAAGAGAACTGAGCCAGTTCTCTGTCTTAAGTTGGTGGCAGTCTGCACTCAAAGCACAAAGGTTATCTCTGTTATTTCATCAGCTCTGCTCACTGTAGAGCTTTTTCTTCTCATCAAGACCTTTCTAACCTCAGGACTGTTGCGTCTTCTGTCCACCGGTACTGTCCCTTTAGTGTAACCTTTTCAAACAACATGATAGAGTGTCTGAAAGGAGCTGGAGAAGATGCCCACTTAGGGGCAGCTCTGATACCACGTTGCATCCTCACCACAATGCAGCTCAGGCCATCAGCAGTGAACACCAGTGAGGTGTCATTACTAATAGTTTTGATGAGCCGGTCTGGATTCTGACAGGATGCTCCTATAAGTTACAATCCCAGGTCTGTGGTTCCCCCTTTTTGGGATCTGTTCCCTTTGGTCCTCTCAACTGGAGCCTTCCCGTCCCTTCCCTTCCTCCAAGGACTGTTCTCTTCCCTGTTCTTCCTCTTCTGCAG
Seq C2 exon
GCCTCTTTGAGCAGCGAGTGGAACAATATTTAGAGGAACTCCCAGACACTGAGCAGAGTGGAATGAACAAGTTTCTCCGTGGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356:ENSBTAT00000007048:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0345514=dDENN=WD(100=84.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGGGCTGGTGTCGGAG
R:
CCAAACCACGGAGAAACTTGT
Band lengths:
315-1137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development