DreINT0156555 @ danRer10
Intron Retention
Gene
ENSDARG00000037363 | st5
Description
suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
Coordinates
chr7:28195027-28196164:-
Coord C1 exon
chr7:28195922-28196164
Coord A exon
chr7:28195114-28195921
Coord C2 exon
chr7:28195027-28195113
Length
808 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
ACCCACCCCTCGTTGAACAGGTC
3' ss Score
8.07
Exon sequences
Seq C1 exon
AGTGCAGCACGTCGTTGAACAGTGTGGTATCGGAGGCCTTCATCCGCTTTTTCCTGGAGACCATTGGCCATTATTCACTGTTTCTCACCCAGGGTGAAAGAGGCGAACGGATCTTCCAGCGCGAACCCTTCCGCAAGTCTGTGGCTTCTAAGAGCATCCGCCGGTTTCTGGGCGTTTTCATGGAGTCTCAGATGTTTGCTGGATTCATCCAGGACCGGGAGATGAGGAAGTGCAGGGCCAAAG
Seq A exon
GTAAACCAATAAAAACAAGACCACTTCTCATCAGATGTGATGTCCTGTTAGCATCAGACCGCTGTAATCCACTTTCACATAGGGCTTTTTGAGGTGGGGTGGAGGGTAACGTTTTAAGCTGGCTGGGAGTCGGATCTTTACTGCCACCTTCTGGTTATCAAAAACAATGTTTTTACATTTAGTTTGTAGTGTATATAGTTGAAGTCAGAATTATTAGCCCCTCTTTGATTTTTTTTTTCTTTTGTAAATATTTCCCAAATGATGTTTAACAGAGCAAGGAAATTTTCAAAGTGTGTCTGATAATATTTTTTCCTCTGGAGAAAGTCTTATTTGTTTTACTTAGGCTAGAATAAAAGCAGTTTTTTTTTGTTGTTTTTTTTACTTGCCTAATTACCCTAACCTGCTTAGTCAACCTAATTAACCTAGTTAAGCCTTTAAATGTCATGTTAAGCTGTATTGAAGTGTCTTGAAAAATATCTATTATAATATTATGTACTGTCATCATGGCAAAGATAAAATAAATCATTTATTAGAGATGAGTTATTAAAACTATTATGTTTAGAAATGTGTTGAAAAAATCCTCTCTCCGTTAAACAGAAATTAGGGAAAAAATAAACAGGGGGCTAATTATTCTGGGGGAGCTAATAATTCTGACTTCAACTGTATAATAGCCATAATTGCTAATAATAACAATTATTATTATTATTGCTGTTATTGTTGTTCTTTTTTTTATTAATATATAAACTTTTTATTTGCTTCTATCTATCTGTCTGTCTGTCTGTCTGTTTACCCACCCCTCGTTGAACAG
Seq C2 exon
GTCTTTTTGAGCAGAGGGTGGAGCAGTATCTGGAGGAGTTACCAGACACAGAACAGAGTGGAGTCAACAAATTTCTGAAGGGTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037363:ENSDART00000133050:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=WD(100=82.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAGCACGTCGTTGAAC
R:
ACCCTTCAGAAATTTGTTGACTCCA
Band lengths:
326-1134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]