HsaINT0159820 @ hg19
Intron Retention
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:11350]
Coordinates
chr11:8717010-8718213:-
Coord C1 exon
chr11:8717974-8718213
Coord A exon
chr11:8717097-8717973
Coord C2 exon
chr11:8717010-8717096
Length
877 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TGCCTGTTTCTTTTACCCAGGCC
3' ss Score
9.02
Exon sequences
Seq C1 exon
AATGTAATACCCTCAATGGGCTGGTGTCGGAGGTGTTTATCCGGTTCTTTGTGGAGACCGTTGGGCACTACTCCCTCTTTCTGACACAGAGTGAGAAGGGAGAGAGGGCCTTTCAGCGAGAGGCCTTCCGCAAATCTGTGGCCTCCAAAAGCATCCGCCGCTTTCTTGAGGTTTTTATGGAGTCTCAGATGTTTGCTGGCTTCATCCAAGACAGGGAGCTAAGAAAGTGTCGGGCAAAGG
Seq A exon
GTAAGTCTTGGTTATCAGCTCTCTTCTCTAATTTTTTCACCCACAGCAGGGCTGAAGAACCAGGCACTATGATGGAAGCTCTTGGACATCAGCTAGGGCCAGGCCTCTTAACATCCCTTTACCTCTGTTAGAAACTTCAAGGTAGCATTCTTCTCCTCCGGCCCCAGTAAATGCCTTCACAAGGCTATGCACAAGCTAAGCCACATGGCTAGAGGTAGGACTCATCTCCACCTAGGAGCAGCATGCCATTGGTTGCCCACCCCCTCCTCAAAGAGAAAGATAGGAGAAAGCCCTTCTATCCAGAGAAAAGGAGCAGACTGAGCAATTTCGGGGGTTCTGAGAACCCAGTGGTTGGGAATTCCCTTACAGAGCATTGGGCCAGCTGTCGTAGGTTGGTGGCAGTCTTCATTTAAGGCAGATGGTTATCTTGTTTTTTGCTATTTCATCAGCTCATTCGAGGGCTTTTTCATCTCATCACAATTTTTCTGTCTAACCTCAGGGTTAGTACTTCTTCTGTCCTCTAATACTATCCATTTAGTATAACAACCTTTTTGGAACAACATGGTAGAGTTGTCTGAAGGAAGCTAGAGATGTCCACTTGGGGCAGCTCTGAACTGAGAAGCAGCCTCCTCACCTAGTGCAGCTTGGGAATGTGCATGGGGAGGCAGGGTGGCAGCAGCAAACCCCGGCAAGATGTCACTAATGATCGCCTTGATGAGCCAGCCCGAATTCTAGTAAGATGCTCCTGCAAATTATCATCCCAGATGTTTTCTTTCTCCTTTTTTGGCATCTGTGCTCCATGGTTCCCTTCATGTAGGCCTCTCCTTCCCTTCCTCCAATGACTGTTCTCTTCCCTGTGCCTGTTTCTTTTACCCAG
Seq C2 exon
GCCTTTTTGAGCAGCGAGTGGAGCAGTACTTAGAAGAACTCCCAGACACTGAGCAGAGTGGAATGAATAAGTTTCTCCGAGGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444-ST5:NM_213618:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0345514=dDENN=WD(100=84.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGGGCTGGTGTCGGAG
R:
ACCTCGGAGAAACTTATTCATTCCA
Band lengths:
311-1188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)