Special

BtaINT0141657 @ bosTau6

Intron Retention

Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44426237-44437458:+
Coord C1 exon
chr15:44426237-44426373
Coord A exon
chr15:44426374-44437306
Coord C2 exon
chr15:44437307-44437458
Length
10933 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TAACTTTTCCTCCTCTGCAGGAG
3' ss Score
10.58
Exon sequences
Seq C1 exon
AAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCTCTTCTCCCACTGAGAACGGTACTGAGAGCCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAGAATGCCTATGAAGACATCGTGG
Seq A exon
GTGAGCAGGGGCCGAGCGGTGGGCTGGCTCATCTGTGGTGCTGCAGGACCGGCGCTCCGGCGCTCCACTTCATTCTCTCTGGGCAGTTGTGGCCCAACTTCTGGAACTTCTCAAGGAAAGGGCATCAGAGAAAGAGGCTTACCAAAGACTGGGCAGCTGAGAGATTAAAGCCGGGCTTTGAATGAATTGGAACCCAAAGGGCTCCTGGGACCACAAAAAGGGGGAACCACACTGTCCCTTTATTTTTGAAAGTCTCTGGAGTCCAATAGGTGCCCTTTCGTAGCTGTGTATCCTCAGGCAAATCACTTTTAACTTTTTTGCGACCTTTTCTCTTATGAAATGATGATTTAAAAAATTTTTAATACCTATTAAGTTTATATTTAAAAAAGAAGAGTCACTAACTAGCAAATGATGGAAACATACAATTGACACTGGCCGAAATACTTGGGGAGGGGGGAGGGAGGTCACGAGGGAGGGGACATAGGTATGCCTATGGCTGATTCATGTTGATGTTTGACAGAAATGGTGATGATAGTTTTATGGTAACAACAATAATAGTAGTAATATGCAAGATTACTGTTAGGATTAAATGAGATAAAATATATATCAAAGTATCTAGCATGATACCTGGTCCTTAATATGTATCTCTCCTACTCTTCCCTTAAAGTAAGTGTGAAGTGTCTGAGATTTCACTCTGTTTGCAAGTTAGCACTAGCCTGCTCAGGTCCACAGATACTGGCAGAAGACAGAGGAGCTTGGATCACAGAGGACTTTACTACTCATGCACAACGGGCCACATGAGCTTGCTGTTCACACAGGTTCCCCTTGCTCCGCAGCCCCATGGGGCAGTGTGGAGGAGGTCCAGGTAGAGGCTGTACACATCGTGGGTCTATTATGTCCAGCCAAGGAACCTCAAGCTTAGGAAACCCCAAGCTTTTCAAGGGGCTGCTGGCAAACCTGTTCAACCTTTGCCCCGTAAGCAGACATAATCCTTATTATTCTGGTCAGGAAACAGATCTGCCTCTGTCCTAGAGGGAGACTCTATCCCCCAAGGCTGTTTGCTCTATAAACATCTTTGAAAAGAATGATTAATTTCTCTTGCTCAGGTTGGAAATGTAGAATACCATGGAGAATTGTCCTCCAGGTACTGGGAGGATATTGTGTTGGCAAACTTGCATCTGAGCGTCAACAAAAAGCAATAATTACAATAGTCGAGGCTCAGTCAGTTCAGTTCAATTGCTCAGTTGTGTCCGATCTCTGCAACCCCATGGACTGCAGCACGCCAGGTCTCCTTGTCCATCACCAGCTCCCAGAGCTTATTCAAACTTAGGTCCGTTGAGTCGGTGATGCCGTCCAACCATCTCATCTTCTGTCGTCCCCTTCTCCTCCCACCTTCAGTCTTTCCCAGCATCAGGGTCTTTTCCAATGCGTCAGTTCTTCGCATCAAGTGGTCAAAGTATTGGAGTTTCAGCTTCAGCGTCAGTCTTTCCAATGAATATTCAGGACTGATTTCCTTTAGGATTAACTGATTGGATCTTCTTGCTGTCCAAGGGACTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAGTTCTTCAGTGCTCAGATTTCTTTACGGTCCAACTCTCACATCTGTACATGACTACCGGAAAAACCATAGCTTTGACTAGACGGACCTTTGTCAGCAAAGTAACGTCTCTGGTTTTTAATAGGCTGTTTAGGTTTGTCATACCTTTTCTTCCAAGGAGCAAGCGTCTTTTAATTTCATGGCTGCAATCGCCATCTGCAGTGATTTTGGAGCCCAAGAAAATAAAGTCTCTCACTGTTTGCATTGTTTCCCCATCTATTTGCCATGAAGTGATAGGACTAGATGCCATGATCTTAGTTTTCTGAGTATTGGGTTTTAAGGCAACTTTTTCACTCTCTTCTTTCACTTTCATCAAGAGGCTCTTTAGTTCTTCTTCACTTTCTCCTTAAGGGTGGTGTCATCTGCGTATCTGAGGTTATTGATATTTCTCCCAGCATTGATTCCAGCTTGTGCTTCATCCAGCCCAGCATTTCTTATAATGTACTCTGCATATAAGTTAAATAAGCACAGTGATGATTTACAGCCTTCATGTACTCCCTTCCAGATTTGGAACCAGTCTGTTGTTCCATGTACAGTTCTAACTGTTGCTTCTTGATGCTTCTAACTGCTGCATATAGATTTCTCAGGAGGCAGGTCAGGTGGTCTTGTATTCCCGTCTCCTTAAGAATCTTCCACAGTTTGTTGTGATCCACGCAGTCAGAGGCTTTGGCATAGTCAATAAAGCAGAAGTAGATGTTTTTCTGAAACTCTTTCACTTTTTCAATGATCCAATGGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAATCCAGCTTGAACGTCTGGAAGTTCACGTACTGTTGAAGCCTGGCTTGGAGAATTTTTAGCATTATTTTGCTAGCGTGTGAGATGAATGTAATTGTGCAGTAGTTTGAGCATTCTTTAGCATTGCCTTTCTCTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCGTATTGAGTGCAGCACTTTCACAGCATCATCTTTTAGGATTTGAAATAACTCAACTGAAATTCCATCACCACCACTAACTTTGTTTGTAGTGATGCTTCTTCCTAAGTCCCACTTGAGTTTGCACTCCAGGATGTCTGGCTCTAGGTAAGTGATCACACCATTGTGGTTATCTGGGTCGTAAACATCTTTTTTGTATAGTTCTTCTGTGTATTCTTACTACTTCTTAATATCTTCTGCGTCTGTCCATACCATTTCTGTCCTTTATTGTGTTCATCTCTGCATGAAATGTTCCCTTGGTATCTCTAATTTTCTTGAAGAGATCTCTAGTCTTTCTCATTCTGTTGTTTTTCTCTATTTCTTTGCATTAATCAGTGAGGAAGGCTTTCTTATCTCTCCTTGCTATTCTTTGGAACTTTGCATTCAAATGGGTGTATCTTTCCTTTCCTCCTTTGCTTTTAGTTTCTCTTCTTTTCACAGCTAGTTGTAAGGCCTCCTCAGACAACCATTTTGCCTTTTTACATTTCTTTTTCTTGGAGATGGTCTTGATCACTGCTTCTTTTACAGTGTCACGAACCTCCATCCATAGTTCTTCAGGCACTCTGTCTATTAGATTAAATCCCTTGAATCTATTTGTCACTTCCACTGTATAATCGTAAGGGATTTGATTTAGGTCATACATGAATAGTCCAGTGGTTTTCTCTGCTTTCTTCAATTTAAGTCTGAATTTGGCAATAAGGAGTTCATGATCTGAGGCCACAGTCAGCTTCCAGTCTTGTTTTTGCTGACTGTATAGAACTGCTCCATCGTTGGCTGCAAAGAATATAATCAATTTGATTTTGGTATTGACCATCTGGTGATGTCCATGTGTAGAGTCTTCTCTTGTGTTATTGGAAGAGGGTGTTTGCTATGACCAGTGCATTCTCTTGGCAAAACTCTGTTAGCTTTGACCTGCTTCATTTTGTACTCCAAGGCCAAATTTGCCTATTACTCCAGGTGTTTCTTAAGTTCCTCCTTTTGCATTCCAGTCCCCTATAATGAAAAAGACATTTTTTTTTTTTTTTTTTTGGTGTTAGTTCTAGAAGTTCTTATAGGTCTTCATAGAACCATTCAACTTCAGCTTCTTCAGCATTACTGGTCAAGGCATAGACTTGGATTACTGTGATATTGAATGGTTTGCCTTGGAACGAACAGAGATCATTCTGTCGTTTTTGAGATTGTATCCAAGTACTGCATTTCAGAATCTTTTGTTGACTATGATGGCTATTCCATTTCTTCTAAAGGATTCTTGCCCACAGTAGTAGATATAATGGTCATCTGAGTTAAGTTCACCCATTCCAATCCATTTTAGTTCCCTGATTCCTAAAATGTTGATGTTCACTCTGCCATCTCCTGTGTGATCACTTCCAATTTGCCTTGATTCATGGACCTCACATTCCAGGTTTCTATGCAATATTGCCCTAGTCGAGGCTAGGTTGAGTTTATTTTTGGGTTTTATCTTAATTCTGGCCAAATTCTCTTCAGCGAGGGTTTCCGTTTTGTTCAAGTGAAGTGTGTGTCTCAGCACAGGTCCCTGAAGAGAAGTCTGCATCCATGCACTTGACCTCTCCTGCCCTCCTCTCTGTCTTGTCTCTGCCTTGGGCCTTGGGGCTGAAGACCATAGTCCTAAGGAGTGTATTCATGCATTCGTCCTAAGTCGCTTCAGTCATGTCTGACTCTTTTTGACCCCATGGACTCTAGCCCATCAGGCTCCTCTGTCCACAGGATTCTCCAGGCAAGAATACTGGAGTGGGCAGACATTCCCTTCTCCTGGGATCAAACCCGGGTCTTCTGCATTGCAGGTGTATTCTTTACCTTCTGAGCCACGTATATAGTTTCCCCAATTACTTTTGATAATTTGTACCACTTCTACCAGAGTGGTACAGTTGTTTACAATTGATGAACCAAAATATCATTATCATCCAAAGTTCATAGTTTATGTTAGGTTTCACTCTTGGTGTTACACACTACATGTGTGCGCTAAGTCACTTCAGTCATGTCCAGCTCTTTGCAGCCCTATATACTACAGCTCTCCAGGCTCCTCTGTCCATGGGATTCTCTAGGCAAGAATACTGGAGTCGGTTGCATGCCCTCCTCCGGGGATCTTCCCCACCCGGGGATTGAACCCACGTCTCTTAGGTCTCCTGCATTGGCAGGCTAGTTCTTTACCACTAGTGCCACCTCGGAAGCCCAATGAGTGTGTTACAGAGAGGAATGACCCTAGTGGAGAGCCCGCCAGGTAAGACTGTGGGATCCTAGGAAGAGAGAGTCATCTAATCCCCTGTTTGATCTGAGTCGTCAGGTTCCTACTTTTCTCCTTACAGCCTGACTGCTCCAGCGTTTCTGGGGAGCCAGCAGCAGTGCTCGGACCCACACAGGCATTGCTTTCCCAGGGTTGGGGTGTATCGGATGTGGCTGCCTGAAGCTCAATCCTATCTGAAAGTCTGTGGGAGTGAGATTCCCCAGAACAGCAAAAGGGCCTGGGGAAAGAGGCCCCTTCAGTTACCACCTGGGAGAAACTTTGTATGCCTGGCCACCCAGAGCTGAGCTCAGTCAGGAGCTGTGGGGGACAGAGGCACAGCCCCATCTTCCTCCCCACCCCAGAGTAGGGTGCACTCCTGTTTGCTCTGTTCTGAGAGAAATCCTCACATGTCACTGCTGCCTGGGGCCCTGGAAGCAGCCGGGGTGGCTGCTGCAGTGGGCAGGGCAGGCTCCAGCTTTCAGCTGTTCCCCTCAGGACCCAGGTGCTGCCGGCACTGGGGCCTGAGCACTCTCTTCTGTGAGAATGCTCTGCAGCCCTTCTGTGCTGCCCAGGGACCTCACCTGGGAATGCTTTTGCATCAGCTGAACTGGAATAAAAGAAAGGGATGCTCCAACCGTTTCTCCCTGTCCAGAGCTCCACAATCACAGGGTTCTGTTTGAGGTTATTTGGAGGCTGTGCATGTAGTGTTGGGGGGTGGGCTGTGGCGGGAGGTGAGAATTTTGGAGGCACTGTTCTGGGCAACAGAACTGTTCTCAGGCCCTCTTTAGGTTAGAAGTTAGAAGAGGTAGAGGGAGGCAAGTGTGTCTGGGCCTTGGCCTCCTCACTCAGTGGAGGGGACTTGCTGCCACTTTGAGGTGTTGCGTGAGAAGGCCAGAAAATAGCAGAGCAGCTTGGATGCCTCTTAGATGGACGAGCTAGAAGCCTGAGTAAGGGCTGGGCTGAGGTGAGGCTGGAGCGGGGACATGTTCCCTAGCTGCTGAGCTCGCTTCCGGATCTTTGGAGCGCTGTGTAGAGAGGAAGGGGTGAGAAGGGATGGCAGGGAGGGCCCCTGGGGGTTCTGGCTGCCCTGGTGTGGTGGGGGTCGGGTGAGTTTCCAAATCTCTGGCTGTTCGGTGCCCTGGGTGTGTTTTCCTCCTTTCTGTCATCACAGTAGCCCTTGAACTTCTAGACCTGCCCAGGGAGGCCAGAGGGAAATTCAAGGGAGGATGTCTCTTTCTCTCAGATTCTGGTTGACTTACCCTTTCTCCTTCCCTGGAGACAGTCCAAGAATTTGGACCCCTCTGAGGCTTCCGAAGGGGGCCCTTGTTGCTGAACTTTGAGTGTCACTTTCACTTTTGCCTCGGACTGAGCAGAGCCTGACTTCCCGGGAGCCTTCTCTCTCCTTGGCCCAGCCTGTGCTCGGTGAGGCTGAGGGTGCTCTGGTTTGGATTATCCAGTTTTTGCCGCCTCCCTTGCCTGGGGGCAGACAGAGCTTTGTTTTGGGTGTGTGATAATGGGGCTGTGGCAGGAGGCGGGAGGTGGGCAGAGAGCACCCACGCTGAGTCTTTATCTTGGGGGCCAGCCCATCGGTCTGGAGTTCCTGGTCTATAAGAGGCTAAGTGCGAGTTGGCCCAGAGACTAATGCGTCTTCTCCATGAGCCCTGGACTTGAACACAGGGCCCTGGGGAGTGCGCTAGCCTCCCACCTAGACCCAGCCTGATGCCTTGGGAACCAGGGTGGGATACTCCAAACCAGGCTGACTTTTACCCTGCTGATTTGCAACAGAGTGGTCCCGAAATAAAGTTAGACTGCTGTGTCGCTTCTAGGGGCTGTTCCTTCTCGCCTGTCCAATTTGACATCTGCCTCTGGAAGATGCTGCTGTCCCACAAAGCCTTATAATCGTTGGCATTCTGAGCCTGACACTCAAAAATGCGGCCAAGGAAGCAGCTTGTTAGAGAGTTATGTGGAGTGGCCTCGGCGCCTGACCAGGGAGCCCAGGCTGCATTCCTGCAGAGATTCCCACTCCCATCAGCTCGCTGGGGCTGAGGGAGCGTTTCCAGGAACTTGAGTGGGGTGGGAGCTGGGGACAGAGCCAGTCAGCCTTACTGTAAAGCTTTTCGAGCGTCTGCTCTTTCTGTCTTCTTCTGTCTTGCATCGCAAGGCTGGGGGACAGTGAGGATTAGAGGCACCTAGTAGCATGGAGGCTGCTGCCCAGAGGTGTCATCCAAGGAACAGTGCCCGGGCAATTGGGAAATGGTGTCCAGCTTTGGAGGGTGGGGAATGGCTGGCCCCTGAGAGCTCCTCATCTGTGCTGTGCATTGCCGGGGCACTGGGCCCTTCATCTGGCCCTGTCTCCTCAGTGCAAGGGAGGGGAAGAGGCCGAGAACCAGAGAAACAGCTGGCTGGACATGAGAGAGGGTTGGGGAGGGAAGCTGCAGACCCAGGGCCCTCACCATGGGTGTGGTCTGGGAAGCTTAAGATTTGGAGAAATTCTCAGTTGTTGACACAGACACGCATCCCTTCTCTAACTGGTTCTTCCACTTGTGTGTGTGTTGGGGGCTGGGGTGTTTGGCATCCGTGGTTAATGGCCACAGGAGACGTGGGGAGGCATGGGGGGGCAGGGCTCAGTGGGACTGGATTCTTCCTTCAAGAGGATCCCCGTGATAGGTTTGGGCTCTGACCAAGCCCCATATAAAAAAAAAGTGCAAAGCAGAAATTCTTGGCGATGCCCCTGTCCTTTGTGTCATCAGCAAAGCTGGGAAAGGGTGAGACCTCTGGCTTCTGCAGCTGGGCTTGATGAGATGGGGCTGCTCCGGGCCAGGCCTTGGGGATGGAGGCCCCACCTCTTCTCTGTCTCCCAGGGCAGCCTGGAGCACCCTTGAGGGAGCTGTGTGGGCAAGAGAGTGGGTGAAGGTCTTCAGATCTGCCAGGTTTCCTACCTCCCATCCAGGCCCTGCAGAGTCTTCTCCAGGTTTCTCCACTCAGCTCCAGCTTCTTCAGCCTCACTGTGGCTCTCTCCCAGAGGAGGGAGGAGGTTCTAAGCTGGATTCCCTAGCCCTCCTGGTCTCCCAGCTCTGAGCCATCACTTTGGGACCGACTGGCTCTAGGCCTTGGGCACTGCTTGGTCTCTGCACATCCCCATGCCCTTGTCACCCTTACTATCTGGACAGGTGGCTGCGTGGGTTTCTGTGTGGCAGCTCCAGGAGGGTCGTCAGAACAATCCAGAAAGTGGGGTGTCAGAAGTGAATGAGGCTGTGAAGGGCTCAAGCTATGGCTGGGGAGGTGGGGCTTGGGCCAGGGCCAACCTTCATTTCCTGGAGAAATGATTAGTGGCCTGGTTATATCTGAGAGGCTGTTGAATGTTGCTGGAGAAGAAAGAGGCTGTTTCTTTCTGTTAGGCTGGGCAGGCAGGAGGAGCAGGCATTTGAAGCTTTCCTGAAGTTTAGTTTCCAGAGGCCATACCAGGCTTGAGACCCTGGTGTTCCCAACTGTTTTCAGTTCCCAGATGATCACTGATATGCATCTGTGACTGTCCCAGGCCTCCGTCTCCTACTTCTATTTCTTGGAGCTTTGGCTTTTGCATTGATGTTCAAAGGGAAAAGAAGGAAGGGAGAGAAGAGGAGTGAAGGAGGGAGGAAAAGAGTTTGCCTTAGCGCTCAGAAGCCATTAGGGAGTTTAGGAACATCTGTCTAAAACAGTGGTTCTTAATGGGGCAAGCATGGGTTGGGGTATAGTTCCATCCATCCATCCGTATCTACCCATCCATCCATCCACTTTTCCTTTGTTCCTCCTTTTCTCCTTCCTTCCTTCTTTTCTTCTATCCATCATCCATCTGTCCGACTCATCATCCGTTTATCCGTCTATCTGCCCAGGGGACATTTGACAGTGTCTGGAGACATTTTCAGTTGTTTGGTTGAGGGGATACTACTGTCCTCTGTGTAGTGAATGGAGGCCAGGGTTGTTACTGAACATCCTACAAATGCACAGTCCAGTCCACCACAACAAGAATTATCCAGCCCCAACTGGAGCAACTCTGATCTAAAGCAGTTGAGACAGGGTCGTCCTGTAGGCTGGGGGAAGATGATAAGGACTCTGGCTGGTCATCCAGCCCAAAGCAGTTTAGATTTGATGAGCCTGGAATACATGTTCTCCCTGCCCCCATCTGCTCTGTCCTGTGTCACAGGATAAGGAAGATTGTATCCTGACTCAACAATCTTTGGTCCCCTAGCCTCACCGCTACAGGACCTATGTTGGCGAGGGACCAGGAAATACAGAGTCTATCCTGATTCCTCCCTGAGTGCCCGCGATGGGGTGGGCTATAGAAAACATGCAAGGGATGTCAGGTTTCATATTTGGCTTCTTGAGGCAGGGCTTCTGGGTCAGCTCTGCTTAGTCAGGGCTCTGGAATGGAGAAAAGTCATTTTCATGGCATGACTGTGTTACAGGAAAGTCTGTGCAGTTGCTGGGGACTCTGCCTGGTGTTGAGAATTACTTAATCCAGTCCCAAATCCTTCCTTGCCCCGTCTTTGACTCATTCGTTTACAGAGATCTGTACGGCTCCCATGGCAGTCTAATTAGCCGTGACTGAAATCCCCCTTCACAGCCCCTCTGCCCCCACACCTCGGCAAAGACATTTCCTAAATTCATGGTGGTTTCTCATGATAGTGATAAAAATGAGATCTGGTAGAGATCTTGGTTTTGGCAATTGAAAACTCTGACGGCATAGAGGATTTGGTAGCTCTCCTGAGTCTGTTGCTTTTTCTGTCTGCTCCCTGAGAAGTGGCAGCTGAACTCCTCTATGGTGGGAGGCACAGGCAGGTGTCTGTGGGGCCCCAGTGGTCCCCCAGGCTCATCCTGCTGCTTGGACAGACAAGGTGGGGCAAGCCCTGCTCTTGTGGTGTGCACCTCCAGCAAAACAGTATTCTGGCCCCTAGCACCTGCGTCCCAAGTAGTGGTATTGGTATAGAGTGGAGGTGGGGAAAGACAAGACAAGGGGGAGTGGAAGGCTGTATTCACTCACAGTCCCTGTGACCCTTGTCACCACTGTGGTTCTGCCACATAACTGAGCCAGGACTCACCTTGCTTGCTTTTTAGGAGTCCAGGTGTATGTTGGCAGGAGGATAGGGCTTGTAGGAAGGGGTTGCTCTTCAAGGGCGGGAATGGACAGCGCTTTTTGGATTTTCTGTGATTTCCTGGTAGTGCCAATGCAGTGCTCTGGACGTCGGAAATGAATCCTGAGAAGAGAAGCAAGAATTCCCCCCAACCCCACCCCTGCAGTCCAAACTCCCTCAGGCTTTTCACATCTCTCGTGTGTCCCAGCAGAAGAGTTTATCACAAAAGGGGATTGATGACCATTGTCCTTTTGCTGAGGTCTGTGGTGGAGGAAGTGGAGTGAGGCTAGTCAGAGCAGTTCATTGAACAAGTAATACTGAGCGCTCACTACTTGCTAATCACTGCTCTGGTGCAGAGTTACCTCAGTGGACCAGGTGAAAGCCATGTCCTGAGAGAGCTGTTGCACAGCGTGCCGGTGAGATGCAGGTCTGGTGCCGCCTGGTGCCACCCGGCTCCCTGGAGTTCACAGAGTCCTCCACACCCACGCCCAGAGGTGGTCCTCAGGGAGCAGGGGGTGAAGAGACAGCTGCGTGACCTCTGAAGGCCTTTCCTGCCTTAAACTGTATATCTCCGGGGCTTTCGCAGAGGACGGACTGGAGCCAAGAAAAGACGCCTGCTGTTGGCTTTGTCCTCTGGCTGGGCACAGGCACGGGTGGCTGAGCCAGTCTTGTGCAATCTTTGAATTTATAAAGCAGAGGCCAGACAAGGCTGAGCTGAATTGGGGAGGGGGGACGGTTCGGCTTCTGGACTCGGAACCAGGCTCTGTTTGTAGCCTTCCCACTGCAGACGGGCAGCTGTGTGACTCATAAGCTGAAGGGCCAGGCAGAAGCCACTGTCTTTGGCTCACAGGAATTCTGCTTGTTTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTCCTTCTTTCCTTCTCTAACTTTTCCTCCTCTGCAG
Seq C2 exon
GAGATCTGCCCAAGGAGAATCCGTATGAGGATGTGGACTTAAAGAGCCGAAGAGCAGGACGAAAACCCCAGCAGCTGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCTCAGGACAGGAAGTACAACAACCCACCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356:ENSBTAT00000007048:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
(ST5)
Chicken
(galGal3)
ALTERNATIVE
(ST5)
Zebrafish
(danRer10)
LOW PSI
(st5)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development